Construct: ORF ccsbBroadEn_14590
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016161.2_s300c1, BRDN0000458417
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLK2 (1196)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294338.2 | 100% | 100% | |
| 2 | human | 1196 | CLK2 | CDC like kinase 2 | NM_003993.4 | 99.7% | 99.7% | 398_399insGCA |
| 3 | human | 1196 | CLK2 | CDC like kinase 2 | XM_011509143.2 | 99.7% | 99.7% | 168_169insAGC |
| 4 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001363704.2 | 99.5% | 99.5% | 168_169insAGC;395_396insGCA |
| 5 | human | 1197 | CLK2P1 | CDC like kinase 2, pseudoge... | NR_002711.3 | 61.8% | (many diffs) | |
| 6 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294339.2 | 54.3% | 54.3% | 0_1ins684 |
| 7 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_007712.4 | 92.2% | 96.6% | (many diffs) |
| 8 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_001163432.2 | 92% | 96.4% | (many diffs) |
| 9 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310016.1 | 57% | 57.2% | (many diffs) |
| 10 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310017.1 | 30.5% | 28.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1563
- ORF length:
- 1497
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgcc gcatcctcga aggtaccact cctcagagcg aggcagccgg gggagttacc 121 gtgaacacta tcggagccga aagcataagc gacgaagaag tcgctcctgg tcaagtagta 181 gtgaccggac acgacggcgt cggcgagagg acagctacca tgtccgttct cgaagcagtt 241 atgatgatcg ttcgtccgac cggagggtgt atgaccggcg atactgtggc agctacagac 301 gcaacgatta tagccgggat cggggagatg cctactatga cacagactat cggcattcct 361 atgaatatca gcgggagaac agcagttacc gcagccagcg cagcagccgg aggaagcaca 421 gacggcggag gaggcgcagc cggacattta gccgctcatc ttcgcagcac agcagccgga 481 gagccaagag tgtagaggac gacgctgagg gccacctcat ctaccacgtc ggggactggc 541 tacaagagcg atatgaaatc gttagcacct taggagaggg gaccttcggc cgagttgtac 601 aatgtgttga ccatcgcagg ggtggggctc gagttgccct gaagatcatt aagaatgtgg 661 agaagtacaa ggaagcagct cgacttgaga tcaacgtgct agagaaaatc aatgagaaag 721 accctgacaa caagaacctc tgtgtccaga tgtttgactg gtttgactac catggccaca 781 tgtgtatctc ctttgagctt ctgggcctta gcaccttcga tttcctcaaa gacaacaact 841 acctgcccta ccccatccac caagtgcgcc acatggcctt ccagctgtgc caggctgtca 901 agttcctcca tgataacaag ctgacacata cagacctcaa gcctgaaaat attctgtttg 961 tgaattcaga ctatgagctc acctacaacc tagagaagaa gcgagatgag cgcagtgtga 1021 agagcacagc tgtgcgggtg gtagactttg gcagtgccac ctttgaccat gagcaccata 1081 gcaccattgt ctccactcgc cattaccgag caccagaagt catccttgag ttgggctggt 1141 cacagccttg tgatgtgtgg agtataggct gcatcatctt tgaatactat gtgggattca 1201 ccctcttcca gacccatgac aacagagagc atctagccat gatggaaagg atcttgggtc 1261 ctatcccttc ccggatgatc cgaaagacaa gaaagcagaa atatttttac cggggtcgcc 1321 tggattggga tgagaacaca tcagctgggc gctatgttcg tgagaactgc aaaccgctgc 1381 ggcggtatct gacctcagag gcagaggaac accaccagct cttcgatctg attgaaagca 1441 tgctagagta tgaaccagct aagcggctga ccttgggtga agcccttcag catcctttct 1501 tcgcccgcct tcgggctgag ccgcccaaca agttgtggga ctccagtcgg gatatcagtc 1561 ggtgcccaac tttcttgtac aaagttggca ttataagaaa gcattgctta tcaatttgtt 1621 gcaacgaac