Construct: ORF ccsbBroadEn_14723
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019041.1_s300c1, BRDN0000458659
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ROR2 (4920)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4920 | ROR2 | receptor tyrosine kinase li... | NM_004560.4 | 100% | 100% | |
| 2 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XM_017014762.1 | 97.5% | 96.1% | (many diffs) |
| 3 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XM_005252008.4 | 85.1% | 85.1% | 0_1ins420 |
| 4 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XM_006717121.3 | 85.1% | 85.1% | 0_1ins420 |
| 5 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XM_017014763.1 | 85.1% | 85.1% | 0_1ins420 |
| 6 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XM_005252009.3 | 57.4% | 57.4% | 0_1ins1203 |
| 7 | human | 4920 | ROR2 | receptor tyrosine kinase li... | XR_001746315.1 | 46.8% | 1_243del;1392_1393ins34;1681_1682ins1357 | |
| 8 | human | 4920 | ROR2 | receptor tyrosine kinase li... | NM_001318204.2 | 45.8% | 41.8% | 1149_1150ins34;1296_1297ins1499 |
| 9 | mouse | 26564 | Ror2 | receptor tyrosine kinase-li... | NM_013846.3 | 87.4% | 92.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2898
- ORF length:
- 2829
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggcccggggc tcggcgctcc cgcggcggcc gctgctgtgc atcccggccg 121 tctgggcggc cgccgcgctt ctgctctcag tgtcccggac ttcaggtgaa gtggaggttc 181 tggatccgaa cgacccttta ggaccccttg atgggcagga cggcccgatt ccaactctga 241 aaggttactt tctgaatttt ctggagccag taaacaatat caccattgtc caaggccaga 301 cggcaattct gcactgcaag gtggcaggaa acccaccccc taacgtgcgg tggctaaaga 361 atgatgcccc ggtggtgcag gagccgcggc ggatcatcat ccggaagaca gaatatggtt 421 cacgactgcg aatccaggac ctggacacga cagacactgg ctactaccag tgcgtggcca 481 ccaacgggat gaagaccatt accgccactg gcgtcctgtt tgtgcggctg ggtccaacgc 541 acagcccaaa tcataacttt caggatgatt accacgagga tgggttctgc cagccttacc 601 ggggaattgc ctgtgcacgc ttcattggca accggaccat ttatgtggac tcgcttcaga 661 tgcaggggga gattgaaaac cgaatcacag cggccttcac catgatcggc acgtctacgc 721 acctgtcgga ccagtgctca cagttcgcca tcccatcctt ctgccacttc gtgtttcctc 781 tgtgcgacgc gcgctcccgg acacccaagc cgcgtgagct gtgccgcgac gagtgcgagg 841 tgctggagag cgacctgtgc cgccaggagt acaccatcgc ccgctccaac ccgctcatcc 901 tcatgcggct tcagctgccc aagtgtgagg cgctgcccat gcctgagagc cccgacgctg 961 ccaactgcat gcgcattggc atcccagccg agaggctggg ccgctaccat cagtgctata 1021 acggctcagg catggattac agaggaacgg caagcaccac caagtcaggc caccagtgcc 1081 agccgtgggc cctgcagcac ccccacagcc accacctgtc cagcacagac ttccctgagc 1141 ttggaggggg gcacgcctac tgccggaacc ccggaggcca gatggagggc ccctggtgct 1201 ttacgcagaa taaaaacgta cgcatggaac tgtgtgacgt accctcgtgt agtccccgag 1261 acagcagcaa gatggggatt ctgtacatct tggtccccag catcgcaatt ccactggtca 1321 tcgcttgcct tttcttcttg gtttgcatgt gccggaataa gcagaaggca tctgcgtcca 1381 caccgcagcg gcgacagctg atggcctcgc ccagccaaga catggaaatg cccctcatta 1441 accagcacaa acaggccaaa ctcaaagaga tcagcctgtc tgcggtgagg ttcatggagg 1501 agctgggaga ggaccggttt gggaaagtct acaaaggtca cctgttcggc cctgccccgg 1561 gggagcagac ccaggctgtg gccatcaaaa cgctgaagga caaagcggag gggcccctgc 1621 gggaggagtt ccggcatgag gctatgctgc gagcacggct gcaacacccc aacgtcgtct 1681 gcctgctggg cgtggtgacc aaggaccagc ccctgagcat gatcttcagc tactgttcgc 1741 acggcgacct ccacgaattc ctggtcatgc gctcgccgca ctcggacgtg ggcagcaccg 1801 atgatgaccg cacggtgaag tccgccctgg agccccccga cttcgtgcac cttgtggcac 1861 agatcgcggc ggggatggag tacctatcca gccaccacgt ggttcacaag gacctggcca 1921 cccgcaatgt gctagtgtac gacaagctga acgtgaagat ctcagacttg ggcctcttcc 1981 gagaggtgta tgccgccgat tactacaagc tgctggggaa ctcgctgctg cctatccgct 2041 ggatggcccc agaggccatc atgtacggca agttctccat cgactcagac atctggtcct 2101 acggtgtggt cctgtgggag gtcttcagct acggcctgca gccctactgc gggtactcca 2161 accaggatgt ggtggagatg atccggaacc ggcaggtgct gccttgcccc gatgactgtc 2221 ccgcctgggt gtatgccctc atgatcgagt gctggaacga gttccccagc cggcggcccc 2281 gcttcaagga catccacagc cggctccgag cctggggcaa cctttccaac tacaacagct 2341 cggcgcagac ctcgggggcc agcaacacca cgcagaccag ctccctgagc accagcccag 2401 tgagcaatgt gagcaacgcc cgctacgtgg ggcccaagca gaaggccccg cccttcccac 2461 agccccagtt catccccatg aagggccaga tcagacccat ggtgcccccg ccgcagctct 2521 acgtccccgt caacggctac cagccggtgc cggcctatgg ggcctacctg cccaacttct 2581 acccggtgca gatcccaatg cagatggccc cgcagcaggt gcctcctcag atggtcccca 2641 agcccagctc acaccacagt ggcagtggct ccaccagcac aggctacgtc accacggccc 2701 cctccaacac atccatggca gacagggcag ccctgctctc agagggcgct gatgacacac 2761 agaacgcccc agaagatggg gcccagagca ccgtgcagga agcagaggag gaggaggaag 2821 gctctgtccc agagactgag ctgctggggg actgtgacac tctgcaggtg gacgaggccc 2881 aagtccagct ggaagctttg ccaactttct tgtacaaagt tggcattata agaaagcatt 2941 gcttatcaat ttgttgcaac gaac