Construct: ORF ccsbBroadEn_14757
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018919.1_s300c1, BRDN0000458215
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PIK3C2G (5288)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | NM_004570.5 | 99.5% | 80.6% | (many diffs) |
| 2 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | NM_001288772.2 | 96.8% | 78.3% | (many diffs) |
| 3 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019474.2 | 96.5% | 80.2% | (many diffs) |
| 4 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_011520696.2 | 94.4% | 78.9% | (many diffs) |
| 5 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019470.1 | 93.9% | 78% | (many diffs) |
| 6 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019471.1 | 93.9% | 78% | (many diffs) |
| 7 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019472.1 | 93.9% | 78% | (many diffs) |
| 8 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019473.2 | 93.9% | 78% | (many diffs) |
| 9 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_011520697.2 | 93.7% | 80.7% | (many diffs) |
| 10 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019476.1 | 93.5% | 77.2% | (many diffs) |
| 11 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019475.1 | 93.4% | 81% | (many diffs) |
| 12 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | NM_001288774.1 | 82% | 63.2% | (many diffs) |
| 13 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019477.1 | 79.3% | 62.9% | (many diffs) |
| 14 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019479.1 | 53.5% | 37.4% | (many diffs) |
| 15 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_011520700.2 | 53.1% | 62.7% | (many diffs) |
| 16 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_011520701.2 | 53.1% | 62.7% | (many diffs) |
| 17 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XM_017019478.2 | 53.1% | 62.7% | (many diffs) |
| 18 | human | 5288 | PIK3C2G | phosphatidylinositol-4-phos... | XR_931307.2 | 50.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 82
- ORF end:
- 3682
- ORF length:
- 3600
- Sequence:
-
1 CGAATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT 61 TTGTACAAAA AAGTTGGCAC CATGGCATAT TCTTGGCAAA CGGATCCAAA TCCTAATGAA 121 TCACACGAAA AGCAGTATGA ACACCAAGAA TTTCTCTTTG TAAATCAACC CCATTCTTCT 181 AGCCAAGTCA GTCTGGGTTT TGATCAGATA GTAGATGAGA TCAGTGGCAA AATTCCACAC 241 TACGAGAGTG AAATTGATGA AAACACCTTT TTTGTGCCCA CTGCACCAAA ATGGGACTCA 301 ACAGGGCATT CATTAAATGA AGCACACCAA ATATCCTTGA ATGAATTCAC TTCTAAAAGC 361 CGTGAACTCT CCTGGCATCA AGTTAGCAAA GCACCAGCAA TTGGTTTTAG TCCTTCTGTG 421 TTACCAAAAC CTCAAAATAC GAATAAAGAA TGCTCCTGGG GAAGCATAGG AAAACATCAT 481 GGTGCTGATG ATTCCAGATT CAGTATTTTA GCTCTATCAT TCACAAGTTT GGATAAAATT 541 AATCTAGAGA AAGAATTAGA AAATGAAAAT CATAACTACC ATATAGGATT TGAAAGTAGC 601 ATTCCTCCAA CAAATTCATC CTTCTCAAGT GACTTCATGC CGAAAGAAGA GAATAAAAGG 661 AGTGGACATG TGAACATTGT GGAACCATCT TTGATGCTTT TGAAAGGCTC TCTTCAACCC 721 GGAATGTGGG AAAGTACATG GCAGAAGAAT ATAGAGTCAA TATGTTGTTC CATTCAGCTA 781 GTGGAAGTAC CTCAAGCAGC ATACGAGTCT GGCCTCTTTT TGCACAAAGT AAAAAAAATC 841 AGAGAAAGAT ATCATGCAGC TGATGTTAAT TTCAATTCTG GGAAGATCTG GAGCACTACT 901 ACAGCATTTC Cgtatcagct cttttctaag accaagttta atatacatat ttttattgat 961 aactcaacac aacctcttca ttttatgcca tgtgctaatt atcttgtcaa agatctaatt 1021 gcagaaattc tgcatttttg cacaaatgac cagctactcc ccaaagatca tattctaagt 1081 gtatgtggct ctgaagaatt tttacaaaac gaccactgtt tggggagcca caaaatgttt 1141 caaaaagata aatctgttat tcagctccac ctgcagaaaa gtagggaagc tccaggaaag 1201 ctatctcgaa agcatgaaga ggaccacagt cagttttatc tgaatcaact tctagaattt 1261 atgcatattt ggaaagtatc cagacaatgt ctcttaacac tcatcagaaa atatgacttc 1321 cacctgaaat acctattgaa aacccaggaa aacgtgtata atattattga agaagttaaa 1381 aaaatatgca gtgttctagg gtgtgtggaa accaaacaaa ttacagatgc agtaaatgaa 1441 ctaagtctaa ttcttcagag aaaaggagag aatttttatc aaagttcaga gacttcagca 1501 aaaggcttga tagagaaggt aacaactgaa ctatccacat ccatctacca gctaatcaat 1561 gtctactgta acagctttta tgcagatttt cagcctgtaa atgtacctag atgcacttcc 1621 tatctaaatc ccgggcttcc ttcccacctc agcttcacag tgtatgcagc acacaacatt 1681 ccagaaacct gggtgcacag gatcaatttt ccccttgaaa taaagtcact tccaagggaa 1741 tccatgctca ctgtaaaact gtttgggatt gcctgtgcaa ccaacaatgc aaatttactg 1801 gcgtggactt gtcttccact gtttccaaaa gaaaaatcca ttctcgggtc tatgctgttc 1861 agcatgacat tacagagtga gcctcccgta gaaatgataa ctccaggagt gtgggatgta 1921 agtcagccat ccccggtgac cctgcagatt gattttccag ctactgggtg ggagtatatg 1981 aaacctgatt ctgaagagaa tagaagtaat cttgaagagc cactaaagga gtgtataaaa 2041 catattgcca gactttcaca gaaacagact cccctactac tctctgaaga aaagaaaaga 2101 tatttatggt tttatcgctt ctactgcaat aatgaaaact gctcccttcc tttagtcctg 2161 ggtagtgccc ctggatggga tgaaaggact gtttcagaaa tgcataccat tttgagaaga 2221 tggacatttt ctcaaccttt agaggctctt gggcttttga cttccagttt tccagatcaa 2281 gaaattcgta aagtggcagt tcaacaatta gacaacctct tgaatgatga actactggaa 2341 tatctcccac agctagttca ggctgtcaag tttgaatgga accttgagag tcctttagtg 2401 caacttctac tccaccgctc cttgcagagc atccaggttg cccatcgtct ttactggctg 2461 ctaaaaaatg cagaaaatga agcttatttt aaaagctggt atcagaagct actagctgct 2521 ctccaattct gtgcaggtaa agccttgaat gatgagtttt ccaaggagca gaaacttatc 2581 aaaattctgg gagatattgg ggaaagagtc aagtctgcca gtgaccatca aagacaggag 2641 gtactgaaga aagaaattgg cagactagaa gagttctttc aagatgtaaa tacttgtcat 2701 cttcctctga accctgccct atgtataaaa gggattgatc acgatgcatg ttcatatttt 2761 acatctaatg ctttgccatt gaagattact ttcatcaatg ctaatccgat gggcaaaaac 2821 atcagcatta tttttaaggc tggagatgat cttcgtcagg atatgcttgt tctgcagctt 2881 attcaagtga tggacaatat ttggctgcag gaaggcttgg atatgcaaat gatcatttat 2941 agatgtctat ccacaggaaa agaccaagga ttggtgcaga tggtacctga tgctgtgacc 3001 ctagcaaaga ttcatcgcca ttctggactg ataggaccat tgaaagaaaa tacaattaaa 3061 aagtggttca gtcagcacaa ccacttaaag gcagattatg aaaaggcctt gaggaacttt 3121 ttctactcct gtgctggctg gtgtgtggta acattcatcc tgggagtatg tgaccgtcac 3181 aatgataata tcatgctgac aaagtcgggc cacatgtttc atattgactt tggaaaattc 3241 ttaggtcatg cacaaacatt tggagggata aaaagggacc gagctccttt catttttact 3301 tcagagatgg aatactttat tacagagggt gggaaaaacc cacagcattt tcaagatttt 3361 gtggaacttt gctgtcgtgc ttataatatt atcagaaagc acagccaact gctcttgaac 3421 ctgctggaaa tgatgctgta tgcaggactg cctgagctaa gtggaattca agacctgaaa 3481 tatgtgtata ataatcttcg tccacaagac acagacctgg aagcaacaag tcattttacc 3541 aagaaaataa aggaaagtct ggagtgtttc cctgttaaat tgaataactt gaTCCACCCC 3601 ACTTGCACAA AAGTCAACCA TAAGCCCTGC CAAATTTACT CCACAGACTT TTCTTCAAGA 3661 ATCCTGTTTG CTGAGTACAA CTAGGTCGAT GAAAAGAGCA ACAATTTTAG GGTTCAGCAA 3721 GAAATCCAGT AATCTGTATC TGATCCAGGT GACACACAGC AACAACGAAA CAAGCCTGAC 3781 AGAAAAATCA TTTGAGCAGT TTTCAAAACT TCACAGCCAA CTTCAGAAGC AGTTTGCATC 3841 ACTGACTCTC CCAGAGTTTC CTCATTGGTG GCACCTACCT TTTACAAATT CAGATCACAG 3901 AAGATTCAGA GATCTAAATC ATTACATGGA ACAGATATTA AATGTATCAC ATGAAGTTAC 3961 AAACAGTGAT TGTGTACTTA GCTTTTTCCT CTCTGAGGCT GTGCAACAAA CAGTTGAAGA 4021 ATCATCACCT GTGTACCTAG GTGAGAAGTT TCCAGACAAG AAGCCTAAGG TGCAGTTAGT 4081 CATATCCTAC GAGGATGTGA AGCTGACCAT ACTAGTGAAA CACATGAAAA ACATTCATCT 4141 CCCAGATGGC TCTGCGCCCA GTGCACATGT TGAATTTTAT CTTTTACCAT ATCCCAGTGA 4201 AGTTCGTAGG AGGAAAACAA AATCTGTTCC AAAATGTACG GACCCCACTT ACAATGAAAT 4261 TGTAGTATAT GATGAAGTCA CAGAGCTCCA AGGACATGTC TTAATGCTTA TTGTGAAGAG 4321 TAAAACTGTA TTTGTGGGAG CAATTAACAT CCGACTCTGT AGTGTCCCAC TCGATAAAGA 4381 AAAATGGTAT CCATTAGGAA ACAGTATAAT TTTGCCAACT TTCTTGTACA AAGTTGGCAT 4441 TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA 4501 AATTCTATTA TTTGCCCA