Construct: ORF ccsbBroadEn_14794
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018936.1_s300c1, BRDN0000458232
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PRKD1 (5587)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5587 | PRKD1 | protein kinase D1 | NM_002742.3 | 99.8% | 23.5% | (many diffs) |
| 2 | human | 5587 | PRKD1 | protein kinase D1 | NM_001330069.2 | 98.9% | 23.3% | (many diffs) |
| 3 | human | 5587 | PRKD1 | protein kinase D1 | NM_001348390.1 | 88.5% | 12.9% | (many diffs) |
| 4 | human | 5587 | PRKD1 | protein kinase D1 | XM_011536965.2 | 88.5% | 12.9% | (many diffs) |
| 5 | human | 5587 | PRKD1 | protein kinase D1 | XM_017021462.1 | 81.7% | 5.4% | (many diffs) |
| 6 | human | 5587 | PRKD1 | protein kinase D1 | XR_943493.2 | 79% | (many diffs) | |
| 7 | mouse | 18760 | Prkd1 | protein kinase D1 | XM_006515587.1 | 87.6% | 21.8% | (many diffs) |
| 8 | mouse | 18760 | Prkd1 | protein kinase D1 | NM_008858.3 | 86.8% | 21.6% | (many diffs) |
| 9 | mouse | 18760 | Prkd1 | protein kinase D1 | XM_006515586.1 | 86.7% | 21.6% | (many diffs) |
| 10 | mouse | 18760 | Prkd1 | protein kinase D1 | XM_006515590.3 | 71.4% | 5.1% | (many diffs) |
| 11 | mouse | 18760 | Prkd1 | protein kinase D1 | XM_011244017.1 | 71.4% | 5.1% | (many diffs) |
| 12 | mouse | 18760 | Prkd1 | protein kinase D1 | XM_006515591.1 | 70.5% | 26.5% | (many diffs) |
| 13 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780432.1 | 54.5% | (many diffs) | |
| 14 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780431.1 | 52.2% | (many diffs) | |
| 15 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780430.1 | 52.2% | (many diffs) | |
| 16 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780427.1 | 38% | (many diffs) | |
| 17 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780429.1 | 37.3% | (many diffs) | |
| 18 | mouse | 18760 | Prkd1 | protein kinase D1 | XR_001780428.1 | 37.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 82
- ORF end:
- 742
- ORF length:
- 660
- Sequence:
-
1 CGGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT 61 TTGTACAAAA AAGTTGGCAC CATGAGCGCC CCTCCGGTCC TGCGGCCGCC CAGTCCGCTG 121 CTGCCCGTGG CGGCGGCAGC TGCCGCAGCG GCCGCCGCAC TGGTCCCAGG GTCCGGGCCC 181 GGGCCCGCGC CGTTCTTGGC TCCTGTCGCG GCCCCGGTCG GGGGCATCTC GTTCCATCTG 241 CAGATCGGCC TGAGCCGTGA GCCGGTGCTG CTGCTGCAGG ACTCGTCCGG GGACTACAGC 301 CTGGCGCACG TCCGCGAGAT GGCTTGCTCC ATTGTCGACC AGAAGTTCCC TGAATGTGGT 361 TTCTACGGAA TGTATGATAA GATCCTGCTT TTTCGCCATG ACCCTACCTC TGAAAACATC 421 CTTCAGCTGG TGAAAGCGGC CAGTGATATC CAGGAAGGCG ATCTTATTGA AGTGGTCTTG 481 TCAGCTTCCG CCACCTTTGA AGACTTTCAG ATTCGTCCCC ACGCTCTCTT TGTTCATTCA 541 TACAGAGCTC CAGCTTTCTG TGATCACTGT GGAGAAATGC TGTGGGGGCT GGTACGTCAA 601 GGTCTTAAAT GTGAAGGGTG TGGTCTGAAT TACCATAAGA GATGTGCATT TAAAATACCC 661 AACAATTGCA GCGGTGTGAG GCGGAGAACG CTCTCAAACG TTTCCCTCAC TGGGGTCAGC 721 ACCATCCGGC ACATCATCTG CTGAACTCTC TACAAGTGCC CCTGATGAGC CCCTTCTGCA 781 AAAATCACCA TCagagtcgt ttattggtcg agagaagagg tcaaattctc aatcatacat 841 tggacgacca attcaccttg acaagatttt gatgtctaaa gttaaagtgc cgcacacatt 901 tgtcatccac tcctacaccc ggcccacagt gtgccagtac tgcaagaagc ttctgaaggg 961 gcttttcagg cagggcttgc agtgcaaaga ttgcagattc aactgccata aacgttgtgc 1021 accgaaagta ccaaacaact gccttggcga agtgaccatt aatggagatt tgcttagccc 1081 tggggcagag tctgatgtgg tcatggaaga agggagtgat gacaatgata gtgaaaggaa 1141 cagtgggctc atggatgata tggaagaagc aatggtccaa gatgcagaga tggcaatggc 1201 agagtgccag aacgacagtg gcgagatgca agatccagac ccagaccacg aggacgccaa 1261 cagaaccatc agtccatcaa caagcaacaa tatcccactc atgagggtag tgcagtctgt 1321 caaacacacg aagaggaaaa gcagcacagt catgaaagaa ggatggatgg tccactacac 1381 cagcaaggac acgctgcgga aacggcacta ttggagattg gatagcaaat gtattaccct 1441 ctttcagaat gacacaggaa gcaggtacta caaggaaatt cctttatctg aaattttgtc 1501 tctggaacca gtaaaaactt cagctttaat tcctaatggg gccaatcctc attgtttcga 1561 aatcactacg gcaaatgtag tgtattatgt gggagaaaat gtggtcaatc cttccagccc 1621 atcaccaaat aacagtgttc tcaccagtgg cgttggtgca gatgtggcca ggatgtggga 1681 gatagccatc cagcatgccc ttatgcccgt cattcccaag ggctcctccg tgggtacagg 1741 aaccaacttg cacagagata tctctgtgag tatttcagta tcaaattgcc agattcaaga 1801 aaatgtggac atcagcacag tatatcagat ttttcctgat gaagtactgg gttctggaca 1861 gtttggaatt gtttatggag gaaaacatcg taaaacagga agagatgtag ctattaaaat 1921 cattgacaaa ttacgatttc caacaaaaca agaaagccag cttcgtaatg aggttgcaat 1981 tctacagaac cttcatcacc ctggtgttgt aaatttggag tgtatgtttg agacgcctga 2041 aagagtgttt gttgttatgg aaaaactcca tggagacatg ctggaaatgA TCCTTGTCAA 2101 GTGAAAAGGG CAGGTTGCCA GAGCACATAA CGAAGTTTTT AATTACTCAG ATACTCGTGG 2161 CTTTGCGGCA CTTTCATTTT AAAAATATCG TTCACTGTGA CCTCAAACCA GAAAATGTGT 2221 TGCTAGCCTC AGCTGATCCT TTTCCTCAGG TGAAACTTTG TGATTTTGGT TTTGCCCGGA 2281 TCATCGGAGA GAAGTCTTTC CGGAGGTCAG TGGTGGGTAC CCCCGCTTAC CTGGCTCCTG 2341 AGGTCCTAAG GAACAAGGGC TACAATCGCT CTCTAGACAT GTGGTCTGTT GGGGTCATCA 2401 TCTATGTAAG CCTAAGCGGC ACATTCCCAT TTAATGAAGA TGAAGACATA CACGACCAAA 2461 TTCAGAATGC AGCTTTCATG TATCCACCAA ATCCCTGGAA GGAAATATCT CATGAAGCCA 2521 TTGATCTTAT CAACAATTTG CTGCAAGTAA AAATGAGAAA GCGCTACAGT GTGGATAAGA 2581 CCTTGAGCCA CCCTTGGCTA CAGGACTATC AGACCTGGTT AGATTTGCGA GAGCTGGAAT 2641 GCAAAATCGG GGAGCGCTAC ATCACCCATG AAAGTGATGA CCTGAGGTGG GAGAAGTATG 2701 CAGGCGAGCA GGGGCTGCAG TACCCCACAC ACCTGATCAA TCCAAGTGCT AGCCACAGTG 2761 ACACTCCTGA GACTGAAGAA ACAGAAATGA AAGCCCTCGG TGAGCGTGTC AGCATCCTCT 2821 TGCCAACTTT CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA ATTTGTTGCA 2881 ACGAACAGGT CACTATCAGT CAAAATAAAA TCATTATTCC CATCCAGCTC TAGGACG