Construct: ORF ccsbBroadEn_14832

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018973.1_s300c1, BRDN0000458269
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
RPS6KA3 (6197)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 NM_004586.3 99.5% 30.5% (many diffs)
2 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_005274573.2 99.4% 30.5% (many diffs)
3 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545556.1 98.6% 30.3% (many diffs)
4 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545555.1 97.6% 30.2% (many diffs)
5 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545563.3 95.8% 26.7% (many diffs)
6 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029713.1 95.8% 26.7% (many diffs)
7 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029714.2 95.8% 26.7% (many diffs)
8 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029715.2 95.8% 26.7% (many diffs)
9 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029716.1 95.8% 26.7% (many diffs)
10 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029717.2 95.8% 26.7% (many diffs)
11 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_006724507.3 95.6% 26.7% (many diffs)
12 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029719.2 95.6% 26.7% (many diffs)
13 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545557.2 95% 26.5% (many diffs)
14 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545558.2 95% 26.5% (many diffs)
15 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545560.1 95% 26.5% (many diffs)
16 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545561.2 95% 26.5% (many diffs)
17 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029718.2 94.3% 24.8% (many diffs)
18 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_005274577.3 94.2% 24.9% (many diffs)
19 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545562.2 93.6% 24.6% (many diffs)
20 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... NM_148945.2 94.1% 30.4% (many diffs)
21 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318353.1 91.2% 27.2% (many diffs)
22 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... NM_001346675.1 90.4% 26.6% (many diffs)
23 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_006528687.1 90.4% 26.6% (many diffs)
24 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318354.1 90.4% 26.6% (many diffs)
25 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318355.1 90.4% 26.6% (many diffs)
26 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_006528688.2 89.1% 24.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
95
ORF end:
809
ORF length:
714
Sequence:
1TATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAGGT TGGCATGCCG CTGGCGCAGC TGGCGGACCC
121GTGGCAGAAG ATGGCTGTGG AGAGCCCGTC CGACAGCGCT GAGAATGGAC AGCAAATTAT
181GGATGAACCT ATGGGAGAGG AGGAGATTAA CCCACAAACT GAAGAAGTCA GTATCAAAGA
241AATTGCAATC ACACATCATG TAAAGGAAGG ACATGAAAAG GCAGATCCTT CCCAGTTTGA
301ACTTTTAAAA GTATTAGGGC AGGGATCATT TGGAAAGGTT TTCTTAGTTA AAAAAATCTC
361AGGCTCTGAT GCTAGGCAGC TTTATGCCAT GAAGGTATTG AAGAAGGCCA CACTGAAAGT
421TCGAGACCGA GTTCGGACAA AAATGGAACG TGATATCTTG GTAGAGGTTA ATCATCCTTT
481TATTGTCAAG TTGCATTATG CTTTTCAAAC TGAAGGGAAG TTGTATCTTA TTTTGGATTT
541TCTCAGGGGA GGAGATTTGT TTACACGCTT ATCCAAAGAG GTGATGTTCA CAGAAGAAGA
601TGTCAAATTC TACTTGGCTG AACTTGCACT TGCTTTAGAC CATCTACATA GCCTGGGAAT
661AATTTATAGA GACTTAAAAC CAGAAAATAT ACTTCTTGAT GAAGAAAGTC ACATCAAGTT
721AACAGATTTC GGCCTAAGTA AAGAGTCTAT TGACCATGAA AAGAAGCATA TTCTTTTTGT
781GGAACTGTGG AGTATATGGC TCCAGAAGTA GTTAATCGTC GAGGTCATAC TCAGAGTGCT
841GACTGGTGGT CTTTTGGTGT GTTAATGTTT GAAATGCTTA CTGGTACACT Ccctttccaa
901ggaaaagatc gaaaagaaac aatgactatg attcttaaag ccaaacttgg aatgccacag
961tttttgagtc ctgaagcgca gagtctttta cgaatgcttt tcaagcgaaa tcctgcaaac
1021agattaggtg caggaccaga tggagttgaa gaaattaaaa gacattcatt tttctcaacg
1081atagactgga ataaactgta tagaagagaa attcatccgc catttaaacc tgcaacgggc
1141aggcctgaag atacattcta ttttgatcct gagtttactg caaaaactcc caaagattca
1201cctggcattc cacctagtgc taatgcacat cagctttttc gggggtttag ttttgttgct
1261attacctcag atgatgaaag ccaagctatg cagacagttg gtgtacattc aattgttcag
1321cagttacaca ggaacagtat tcagtttact gatggatatg aagtaaaaga agatattgga
1381gttggctcct actctgtttg caagagatgt atacataaag ctacaaacat ggagtttgca
1441gtgaagatta ttgataaaag caagagagac ccaacagaag aaattgaaat tcttcttcgt
1501tatggacagc atccaaACAT ATCACCTCTA AAGGAATGTA TATGATGATG GAAAGTATGT
1561GTATGTAGTA ACAGAACTTA TGAAAGGAGT GAATGGCTGG ATAAAATTTT AGACAAAATT
1621TTTCTCTGAA CGAGAGGCCA GTGCTGTCCT GTTCACTATA ACTAAAACCG TTGAATATCT
1681TCACGCACAA GGGGTGGTTC ATAGAGACTT GAAACCTAGC AACATTCTTT ATGTGGATGA
1741ATCTGGTAAT CCGGAATCTA TTCGAATTTG TGATTTTGGC TTTGCAAAAC AGCTGAGAGC
1801GGAAAATGGT CTTCTCATGA CTCCTTGTTA CACTGCAAAT TTTGTTGCAC CAGAGGTTTT
1861AAAAAGACAA GGCTATGATG CTGCTTGTGA TATATGGAGT CTTGGTGTCC TACTCTATAC
1921AATGCTTACC GGTTACACTC CATTTGCAAA TGGTCCTGAT GATACACCAG AGGAAATATT
1981GGCACGAATA GGTAGCGGAA AATTCTCACT CAGTGGTGGT TACTGGAATT CTGTTTCAGA
2041CACAGCAAAG GACCTGGTGT CAAAGATGCT TCATGTAGAC CCTCATCAGA GACTGACTGC
2101TGCTCTTGTG CTCAGACATC CTTGGATCGT CCACTGGGAC CAACTGCCAC AATACCAACT
2161AAACAGACAG GATGCACCAC ATCTAGTAAA GGGTGCCATG GCAGCTACAT ATTCTGCTTT
2221GAACCGTAAT CAGTCACCAG TTTTGGAACC AGTAGGCCGC TCTACTCTTG CTCAGCGGAG
2281AGGTATTAAA AAAATCACCT CAACAGCCCT GTTGCCAACT TTCTTGTACA AAGTTGGCAT
2341TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA
2401AATCATTATT GCCATCCAGC CTGAATTCCC CCT

Download FASTA (ORF) (Full)

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