Construct: ORF ccsbBroadEn_14832
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018973.1_s300c1, BRDN0000458269
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- RPS6KA3 (6197)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | NM_004586.3 | 99.5% | 30.5% | (many diffs) |
| 2 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_005274573.2 | 99.4% | 30.5% | (many diffs) |
| 3 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545556.1 | 98.6% | 30.3% | (many diffs) |
| 4 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545555.1 | 97.6% | 30.2% | (many diffs) |
| 5 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545563.3 | 95.8% | 26.7% | (many diffs) |
| 6 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029713.1 | 95.8% | 26.7% | (many diffs) |
| 7 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029714.2 | 95.8% | 26.7% | (many diffs) |
| 8 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029715.2 | 95.8% | 26.7% | (many diffs) |
| 9 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029716.1 | 95.8% | 26.7% | (many diffs) |
| 10 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029717.2 | 95.8% | 26.7% | (many diffs) |
| 11 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_006724507.3 | 95.6% | 26.7% | (many diffs) |
| 12 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029719.2 | 95.6% | 26.7% | (many diffs) |
| 13 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545557.2 | 95% | 26.5% | (many diffs) |
| 14 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545558.2 | 95% | 26.5% | (many diffs) |
| 15 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545560.1 | 95% | 26.5% | (many diffs) |
| 16 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545561.2 | 95% | 26.5% | (many diffs) |
| 17 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_017029718.2 | 94.3% | 24.8% | (many diffs) |
| 18 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_005274577.3 | 94.2% | 24.9% | (many diffs) |
| 19 | human | 6197 | RPS6KA3 | ribosomal protein S6 kinase A3 | XM_011545562.2 | 93.6% | 24.6% | (many diffs) |
| 20 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | NM_148945.2 | 94.1% | 30.4% | (many diffs) |
| 21 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | XM_017318353.1 | 91.2% | 27.2% | (many diffs) |
| 22 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | NM_001346675.1 | 90.4% | 26.6% | (many diffs) |
| 23 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | XM_006528687.1 | 90.4% | 26.6% | (many diffs) |
| 24 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | XM_017318354.1 | 90.4% | 26.6% | (many diffs) |
| 25 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | XM_017318355.1 | 90.4% | 26.6% | (many diffs) |
| 26 | mouse | 110651 | Rps6ka3 | ribosomal protein S6 kinase... | XM_006528688.2 | 89.1% | 24.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 95
- ORF end:
- 809
- ORF length:
- 714
- Sequence:
-
1 TATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAGGT TGGCATGCCG CTGGCGCAGC TGGCGGACCC 121 GTGGCAGAAG ATGGCTGTGG AGAGCCCGTC CGACAGCGCT GAGAATGGAC AGCAAATTAT 181 GGATGAACCT ATGGGAGAGG AGGAGATTAA CCCACAAACT GAAGAAGTCA GTATCAAAGA 241 AATTGCAATC ACACATCATG TAAAGGAAGG ACATGAAAAG GCAGATCCTT CCCAGTTTGA 301 ACTTTTAAAA GTATTAGGGC AGGGATCATT TGGAAAGGTT TTCTTAGTTA AAAAAATCTC 361 AGGCTCTGAT GCTAGGCAGC TTTATGCCAT GAAGGTATTG AAGAAGGCCA CACTGAAAGT 421 TCGAGACCGA GTTCGGACAA AAATGGAACG TGATATCTTG GTAGAGGTTA ATCATCCTTT 481 TATTGTCAAG TTGCATTATG CTTTTCAAAC TGAAGGGAAG TTGTATCTTA TTTTGGATTT 541 TCTCAGGGGA GGAGATTTGT TTACACGCTT ATCCAAAGAG GTGATGTTCA CAGAAGAAGA 601 TGTCAAATTC TACTTGGCTG AACTTGCACT TGCTTTAGAC CATCTACATA GCCTGGGAAT 661 AATTTATAGA GACTTAAAAC CAGAAAATAT ACTTCTTGAT GAAGAAAGTC ACATCAAGTT 721 AACAGATTTC GGCCTAAGTA AAGAGTCTAT TGACCATGAA AAGAAGCATA TTCTTTTTGT 781 GGAACTGTGG AGTATATGGC TCCAGAAGTA GTTAATCGTC GAGGTCATAC TCAGAGTGCT 841 GACTGGTGGT CTTTTGGTGT GTTAATGTTT GAAATGCTTA CTGGTACACT Ccctttccaa 901 ggaaaagatc gaaaagaaac aatgactatg attcttaaag ccaaacttgg aatgccacag 961 tttttgagtc ctgaagcgca gagtctttta cgaatgcttt tcaagcgaaa tcctgcaaac 1021 agattaggtg caggaccaga tggagttgaa gaaattaaaa gacattcatt tttctcaacg 1081 atagactgga ataaactgta tagaagagaa attcatccgc catttaaacc tgcaacgggc 1141 aggcctgaag atacattcta ttttgatcct gagtttactg caaaaactcc caaagattca 1201 cctggcattc cacctagtgc taatgcacat cagctttttc gggggtttag ttttgttgct 1261 attacctcag atgatgaaag ccaagctatg cagacagttg gtgtacattc aattgttcag 1321 cagttacaca ggaacagtat tcagtttact gatggatatg aagtaaaaga agatattgga 1381 gttggctcct actctgtttg caagagatgt atacataaag ctacaaacat ggagtttgca 1441 gtgaagatta ttgataaaag caagagagac ccaacagaag aaattgaaat tcttcttcgt 1501 tatggacagc atccaaACAT ATCACCTCTA AAGGAATGTA TATGATGATG GAAAGTATGT 1561 GTATGTAGTA ACAGAACTTA TGAAAGGAGT GAATGGCTGG ATAAAATTTT AGACAAAATT 1621 TTTCTCTGAA CGAGAGGCCA GTGCTGTCCT GTTCACTATA ACTAAAACCG TTGAATATCT 1681 TCACGCACAA GGGGTGGTTC ATAGAGACTT GAAACCTAGC AACATTCTTT ATGTGGATGA 1741 ATCTGGTAAT CCGGAATCTA TTCGAATTTG TGATTTTGGC TTTGCAAAAC AGCTGAGAGC 1801 GGAAAATGGT CTTCTCATGA CTCCTTGTTA CACTGCAAAT TTTGTTGCAC CAGAGGTTTT 1861 AAAAAGACAA GGCTATGATG CTGCTTGTGA TATATGGAGT CTTGGTGTCC TACTCTATAC 1921 AATGCTTACC GGTTACACTC CATTTGCAAA TGGTCCTGAT GATACACCAG AGGAAATATT 1981 GGCACGAATA GGTAGCGGAA AATTCTCACT CAGTGGTGGT TACTGGAATT CTGTTTCAGA 2041 CACAGCAAAG GACCTGGTGT CAAAGATGCT TCATGTAGAC CCTCATCAGA GACTGACTGC 2101 TGCTCTTGTG CTCAGACATC CTTGGATCGT CCACTGGGAC CAACTGCCAC AATACCAACT 2161 AAACAGACAG GATGCACCAC ATCTAGTAAA GGGTGCCATG GCAGCTACAT ATTCTGCTTT 2221 GAACCGTAAT CAGTCACCAG TTTTGGAACC AGTAGGCCGC TCTACTCTTG CTCAGCGGAG 2281 AGGTATTAAA AAAATCACCT CAACAGCCCT GTTGCCAACT TTCTTGTACA AAGTTGGCAT 2341 TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA 2401 AATCATTATT GCCATCCAGC CTGAATTCCC CCT