Construct: ORF ccsbBroadEn_14842
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008255.1_s300c1, BRDN0000391424
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SMARCD2 (6603)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6603 | SMARCD2 | SWI/SNF related, matrix ass... | NM_001330440.1 | 96.2% | 12.4% | (many diffs) |
| 2 | human | 6603 | SMARCD2 | SWI/SNF related, matrix ass... | NM_001330439.1 | 95.5% | 11.1% | (many diffs) |
| 3 | human | 6603 | SMARCD2 | SWI/SNF related, matrix ass... | NM_001098426.2 | 88.9% | 13.5% | (many diffs) |
| 4 | mouse | 83796 | Smarcd2 | SWI/SNF related, matrix ass... | NM_031878.2 | 87.9% | 11.8% | (many diffs) |
| 5 | mouse | 83796 | Smarcd2 | SWI/SNF related, matrix ass... | NM_001130187.1 | 81.1% | 12.9% | (many diffs) |
| 6 | mouse | 83796 | Smarcd2 | SWI/SNF related, matrix ass... | XM_006534552.3 | 78.2% | 12.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 303
- ORF length:
- 234
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGCCCGGA CCGGCGCTGc ggggaccggg tccggcgcag taccagcgac 121 ctggcatgtc accagggaac cggatgccca tggctggctt gcaggtggga ccccctgctg 181 gctccccatt tggtgcagca gctccgcttc gacctggcat gccacccacc atgatggatc 241 cattccgaaa acgcctgctt gtgccccagg cgcagcctcC CATACTGCCC GGCGCCNGGG 301 GTTAAAGAGG AGGAAGATGG CAGATAAGGT TCTACCTCAG CGAATCCGGG AGCTTGTTCC 361 AGAGTCTCAG GCGTACATGG ATCTCTTGGC TTTTGAGCGG AAGCTGGACC AGACCATTGC 421 TCGCAAGCGG ATGGAGATCC AGGAGGCCAT CAAAAAGCCT CTGACACAAA AGCGAAAGCT 481 TCGGATCTAC ATTTCCAATA CGTTCAGTCC CAGCAAGGCG GAAGGCGATA GTGCAGGAAC 541 TGCAGGGACC CCTGGGGGAA CCCCAGCAGG GGACAAGGTG GCTTCCTGGG AACTCCGAGT 601 GGAAGGAAAA CTGCTGGATG ATCCTAGCAA ACAGAAGAGG AAGTTTTCTT CATTCTTTAA 661 GAGCCTCGTC ATTGAGCTGG ACAAGGAGCT GTACGGGCCT GACAATCACC TGGTGGAGTG 721 GCACCGGATG CCCACCACCC AGGAGACAGA TGGCTTCCAA GTAAAACGGC CTGGAGACCT 781 CAACGTCAAG TGCACCCTCC TGCTCATGCT GGATCATCAG CCTCCCCAGT ACAAATTGGA 841 CCCCCGATTG GCAAGGCTGC TGGGAGTGCA CACGCAGACG AGGGCCGCCA TCACGCAGGC 901 CCTGTGGCTT TACATCAAGC ACAACCAGCT GCAGGATGGG CACGAGCGGG AGTACATCAA 961 CTGCAACCGT TACTTCCGCC AGATCTTCAG TTGTGGCCGA CTCAGTTTCT CCAAGATTCC 1021 CATGAAGCTG GCAGGGTTGC TGCAGCATCC AGACCCCATT GTCATCAACC ATGTCATTAG 1081 TGTCGACCCT AACGACCAGA AGAAGACAGC CTGTTACGAC ATCGATGTGG AGGTGGACGA 1141 CCCACTGAAG GCCCAAATGA GCAATTTTCT GGCCTCTACC ACCAATCAGC AGGAGATCGC 1201 CTCCCTTGAT GTCAAGATCC ATGAGACCAT TGAGTCCATC AACCAGCTGA AGACCCAGAG 1261 AGATTTCATG CTCAGTTTTA GCACCGACCC CCAGGACTTC ATCCAGGAAT GGCTCCGTTC 1321 CCAGCGCCGA GACCTCAAGA TCATCACTGA TGTGATTGGA AATCCTGAGG AGGAGAGACG 1381 AGCTGCTTTC TACCACCAGC CCTGGGCCCA GGAAGCAGTA GGCAGGCACA TCTTTGCCAA 1441 GGTGCAGCAG CGAAGGCAGG AACTGGAACA GGTGCTGGGA ATTCGCCTGA CCTTGCCAAC 1501 TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac