Construct: ORF ccsbBroadEn_14863
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018914.1_s300c1, BRDN0000458210
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TGFBR3 (7049)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7049 | TGFBR3 | transforming growth factor ... | NM_003243.5 | 99.2% | 28% | (many diffs) |
| 2 | human | 7049 | TGFBR3 | transforming growth factor ... | XM_006710867.2 | 99.2% | 28% | (many diffs) |
| 3 | human | 7049 | TGFBR3 | transforming growth factor ... | NM_001195683.2 | 99.1% | 28% | (many diffs) |
| 4 | human | 7049 | TGFBR3 | transforming growth factor ... | NM_001195684.1 | 99.1% | 28% | (many diffs) |
| 5 | human | 7049 | TGFBR3 | transforming growth factor ... | NR_036634.2 | 39.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 857
- ORF length:
- 759
- Sequence:
-
1 CACGGATTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG ACTTCCCATT ATGTGATTGC 121 CATCTTTGCC CTGATGAGCT TCTGTTTAGC CACTGCAGGT CCAGAGCCTG GTGCACTGTG 181 TGAACTGTCA CCTGTCAGTG CCTCCCATCC TGTCCAGGCC TTGATGGAGA GCTTCACTGT 241 TTTGTCAGGC TGTGCCAGCA GAGGCACAAC TGGGCTGCCA CAGGAGGTGC ATGTCCTGAA 301 TCTCCGCACT GCGGGCCAGG GGCCTGGCCA GCTACAGAGA GAGGTCACAC TTCACCTGAA 361 TCCCATCTCC TCAGTCCACA TCCACCACAA GTCTGTTGTG TTCCTGCTCA ACTCCCCACA 421 CCCCCTGGTG TGGCATCTGA AGACAGAGAG ACTTGCCACT GGGGTCTCCA GACTGTTTTT 481 GGTGTCTGAG GGTTCTGTGG TCCAGTTTTC ATCAGCAAAC TTCTCCTTGA CAGCAGAAAC 541 AGAAGAAAGG AACTTCCCCC ATGGAAATGA ACATCTGTTA AATTGGGCCC GAAAAGAGTA 601 TGGAGCAGTT ACTTCATTCA CCGAACTCAA GATAGCAAGA AACATTTATA TTAAAGTGGG 661 GGAAGATCAA GTGTTCCCTC CAAAGTGCAA CATAGGGAAG AATTTTCTCT CACTCAATTA 721 CCTTGCTGAG TACCTTCAAC CCAAAGCAGC AGAACGGTGT GTGATGTCCA GCCAGCCCCA 781 GAATGAGGAA GTACACATCA TCGAGCTAAT CACCCCAACT CTAACCCCTA CAGTGCTTTC 841 CAGTGGATAT AACAATTGAT ATAGACCTTC TCAGAGGATC CTTGAAgtgg tcaaaaatct 901 catcctgatc ttgaagtgca aaaagtctgt caactgggtg atcaaatctt ttgatgttaa 961 gggaagcctg aaaattattg ctcctaacag tattggcttt ggaaaagaga gtgaaagatc 1021 tatgacaatg accaaatcaa taagagatga cattccttca acccaaggga atctggtgaa 1081 gtgggctttg gacaatggct atagtccaat aacttcatac acaatggctc ctgtggctaa 1141 tagatttcat cttcggcttg aaaataatgc agaggagatg ggagatgagg aagtccacac 1201 tattcctcct gagctacgga tcctgctgga ccctggtgcc ctgcctgccc tgcagaaccc 1261 gcccatccgg ggaggggaag gccaaaatgg aggccttccg tttcctttcc cagatatttc 1321 caggagagtc tggaatgaag agggagaaga tgggctccct cggccaaagg accctgtcat 1381 tcccagcata caactgtttc ctggtctcag agagccagaa gaggtgcaag ggagcgtgga 1441 tattgccctg tctgtcaaat gtgacaatga gaagatgatc gtggctgtag aaaaagattc 1501 ttttcaggcc agtggctact cggggatgga cgtcaccctg ttggatccta cctgcaaggc 1561 caagatgaat ggcacacact ttgttttgga gtctcctctg aatggctgcg gtactcggcc 1621 ccggtggtca gcccttgatg gtgtggtcta ctataactcc attgtgatac aggttccagc 1681 ccttggggac agtagtggtt ggccagatgg ttatgaagat ctggagtcag gtgataatgg 1741 atttccggga gatatggatg aaggagatgc ttccctgttc acccgacctg aaatcgtggt 1801 gtttaattgc agccttcagc aggtgaggaa ccccagcagc ttccaggaac agccccacGG 1861 GAACATCACC TTTCAACATG GAGCTATACA CCACTGACCC TCTTTTGGTG CCTCCCCAGG 1921 GGCGTCTCTC TGTGCCAGAG AATGGACACG TTTATGTTGA GGTATCTGTT ACTAAGGCTG 1981 AACAAGAACT GGGATTTGCC ATCCAAAACG TGCTTTATCT CTCCATATTC GAACCCTGAT 2041 AGGATGTCTC ATTACACCAT TATTGAGAAT ATTTGTCCTA AAGATGAATC TGTGAAATTC 2101 TACAGTCCCA AGAGAGTGCA CTTTCCTATC CCGCAAGCTG ACATGGATAA GAAGCGATTC 2161 AGCTTTGTCT TCAAGCCTGT CTTCAACACC TCACTGCTCT TTCTACAGTG TGAGCTGACG 2221 CTGTGTACGA AGATGGAGAA GCACCCCCAG AAGTTGCCTA AGTGTGTGCC TCCTGACGAA 2281 GCCTGCACCT CGCTGGACGC CTCGATAATC TGGGCCATGA TGCAGAATAA GAAGACGTTC 2341 ACTAAGCCCC TTGCTGTGAT CCACCATGAA GCAGAATCTA AAGAAAAAGG TCCAAGCATG 2401 AAGGAACCAA ATCCAATTTC TCCACCAATT TTCCATGGTC TGGACACCCT AACCGTGATG 2461 GGCATTGCGT TTGCAGCCTT TGTGATCGGA GCACTCCTGA CGGGGGCCTT GTGGTACATC 2521 TATTCTCACA CAGGGGAGAC AGCAGGAAGG CAGCAAGTCC CCACCTCCCC GCCAGCCTCG 2581 GAAAACAGCA GTGCTGCCCA CAGCATCGGC AGCACGCAGA GCACGCCTTG CTCCAGCAGC 2641 AGCACGGCCT TGCCAACTTT CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA 2701 ATTTGTTGCA ACGAACAGGT CACTATCAGT CAAAATAAAA TCATTATTGC CATCCCAGCC 2761 TGAAA