Construct: ORF ccsbBroadEn_14880
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004065.1_s300c1, BRDN0000457078
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF84 (7637)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7637 | ZNF84 | zinc finger protein 84 | NM_001127372.3 | 98.6% | 98.5% | (many diffs) |
| 2 | human | 7637 | ZNF84 | zinc finger protein 84 | NM_001289971.2 | 98.6% | 98.5% | (many diffs) |
| 3 | human | 7637 | ZNF84 | zinc finger protein 84 | NM_001289972.1 | 98.6% | 98.5% | (many diffs) |
| 4 | human | 7637 | ZNF84 | zinc finger protein 84 | NM_003428.5 | 98.6% | 98.5% | (many diffs) |
| 5 | human | 7637 | ZNF84 | zinc finger protein 84 | XM_005266185.1 | 98.6% | 98.5% | (many diffs) |
| 6 | human | 7637 | ZNF84 | zinc finger protein 84 | XM_005266186.1 | 98.6% | 98.5% | (many diffs) |
| 7 | human | 7637 | ZNF84 | zinc finger protein 84 | XM_011534832.1 | 98.6% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2283
- ORF length:
- 2214
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCATGTTA CAGGAGTCAT TCTCATTTGA CGATTTATCT GTGGACTTCA 121 CCCAAAAGGA GTGGCAGCTA CTGGATCCCT CTCAGAAGAA TTTATACAAG GATGTGATGT 181 TGGAGAACTA TAGCAGCCTA GTGTCACTGG GGTATGAAGT TATGAAACCA GATGTCATCT 241 TCAAATTGGA GCAAGGAGAA GAGCCGTGGG TAGGAGATGG AGAAATTCCA AGTTCAGATT 301 CTCCAGAAGT CTGGAAAGTA GATGGTAACA TGATGTGGCA CCAGGATAAC CAAGACAAGC 361 TTAAAATTAT AAAAAGAGGT CATGAATGTG ATGCATTTGG AAAAAATTTC AATCTGAACA 421 TGAACTTTGT TCCTTTAAGG AAATCAAACA GTGAAGGTGA CTTAGATGGA TTGATTTTAA 481 AACATCATTT AGATTTGCTT ATTCCAAAAG GAGATTATGG AAAAGCAGAA TCAGATGACT 541 TTAATGTGTT TGATAATTTT TTTCTCCATT CCAAGCCTGA GGATACTGAT ACCTGGTTAA 601 AATACTATGA CTGTGATAAA TATAAAGAGA GCTATAAAAA GTCACAGATT ATCATATATC 661 ATAGAAATCG TTTAGGGGAG AAACTCTATG AATGCAGTGA ATGTAGGAAG CGCTTCAGTA 721 AGAAACCAAG TCTCATTAAA CATCAGAGCA GACATATAAG AGACATAGCC TTTGGCTGTG 781 GTAATTGTGG CAAAACCTTT CCCCAGAAGT CTCAGTTTAT TACACATCAC AGAACTCATA 841 CAGGAGAAAA ACCTTATAAT TGTAGCCAGT GTGGGAAAGC CTTCTCCCAA AAGTCACAGC 901 TCACATCCCA TCAGCGGACA CATACAGGAG AGAAACCTTA TGAGTGTGGT GAATGTGGGA 961 AAGCCTTCTC CCGGAAGTCA CATCTCATAT CGCATTGGAG AACACACACA GGAGAGAAAC 1021 CCTATGGATG CAGTGAATGT AGGAAGGCCT TTCgtgaaaa gtccaatctc attaaccatc 1081 agagaattca taccggtgag aagccttttg aatgcaggga atgtgggaaa gccttcagca 1141 ggaagtcaca actcgttaca catcacagaa ctcacacagg aacaaaaccc tttggatgta 1201 gtgattgtag aaaagccttc tttgagaagt cagagcttat tagacatcag acaattcata 1261 ctggagagaa accctatgaa tgcagcgagt gtaggaaagc atttagagag aggtcgagtc 1321 tcattaatca tcagagaaca catacaggag agaaacctca tggatgcatt cagtgtggga 1381 aggccttctc ccagaagtca catctcatat cacatcagat gacacacaca ggagaaaaac 1441 cctttatatg cagtaaatgt gggaaagcct tcagcaggaa atcacagctc gttagacatc 1501 agagaactca tacgggagaa aaaccgtatg aatgcagtga gtgtgggaaa gctttcagtg 1561 aaaaattaag tctcactaat catcaaagaa ttcatacagg agaaaaacca tatgtatgca 1621 gtgaatgtgg gaaagccttt tgtcagaagt cacatctcat atcacatcag aggacacata 1681 caggggagaa accctatgaa tgcagtgaat gtgggaaggc ctttggtgag aagtcaagtc 1741 ttgcaactca tcagagaact catactggag aaaaaccgta tgaatgcagg gactgtgaaa 1801 aagctttctc ccagaaatca cagctaaata cccatcagag aattcacgct ggagagaaac 1861 cctatgaatg cagtctttgt aggaaagctt tttttgagaa gtcggagcta attagacatc 1921 tgagaactca tacaggagaa aaaccttatg aatgcaatga atgtagaaaa gccttcaggg 1981 agaagtcaag tctcatcaat catcagagaa tACATACAGG AGAGAAACCT TATGAGTGTG 2041 GTGAATGTGG GAAAGCCTTC TCCCGGAAGT CACATCTCAT ATCGCATTGG AGAACACACA 2101 CAGGAGAGAA ACCCTATGGA TGCAGTGAAT GTAGGAAGGC CTTCTCTCAG AAGTCANNGC 2161 TGGTTAATCA TCAGAGAATT CATACAGGAG AGAAGCCTTN NCGATGCATT GAATGTGGGA 2221 AAGCTTTCTC ACAGAAGTCA CAGCTCATCA ATCATCAGAG AACTCATACA GTAAAAAAAT 2281 CCTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 2341 gcaacgaac