Construct: ORF ccsbBroadEn_14956
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018957.1_s300c1, BRDN0000458253
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LRPPRC (10128)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10128 | LRPPRC | leucine rich pentatricopept... | NM_133259.4 | 99.5% | 15.3% | (many diffs) |
| 2 | human | 10128 | LRPPRC | leucine rich pentatricopept... | XM_011532473.1 | 97.7% | 15.6% | (many diffs) |
| 3 | human | 10128 | LRPPRC | leucine rich pentatricopept... | XM_006711915.2 | 96.5% | 12.4% | (many diffs) |
| 4 | human | 10128 | LRPPRC | leucine rich pentatricopept... | XM_017003117.1 | 94.7% | 12.6% | (many diffs) |
| 5 | human | 10128 | LRPPRC | leucine rich pentatricopept... | XM_006711916.3 | 75% | 20.3% | (many diffs) |
| 6 | human | 10128 | LRPPRC | leucine rich pentatricopept... | XR_002958896.1 | 61.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 772
- ORF length:
- 675
- Sequence:
-
1 GGGATGATCA GTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG CAGCCCTGCT GAGATCCGCG 121 CGTTGGTTGC TGCGTGCCGG GGCGGCCCCG CGCCTCCCGC TCTCCCTGCG CCTCCTCCCT 181 GGCGGCCCGG GCCGGCTGCA TGCCGCCTCC TATCTGCCCG CCGCTCGCGC CGGGCCCGTG 241 GCCGGAGGAC TACTGAGCCC AGCCAGGCTG TATGCCATTG CTGCCAAAGA AAAAGATATT 301 CAAGAGGAGT CCACTTTTTC TTCTAGGAAG ATTTCCAATC AATTTGATTG GGCTCTAATG 361 AGACTAGATC TTTCTGTTCG AAGAACTGGC CGCATTCCAA AGAAGCTTCT ACAAAAAGTT 421 TTTAATGATA CCTGCCGCTC AGGTGGCCTA GGTGGTAGTC ATGCCTTGCT TCTACTACGT 481 AGTTGTGGTT CTCTCTTGCC TGAACTAAAG CTTGAAGAGA GAACAGAATT TGCTCATAGG 541 ATATGGGACA CACTTCAGAA ATTAGGTGCT GTGTATGATG TGAGTCACTA TAATGCTTTA 601 CTTAAAGTCT ATCTTCAAAA TGAATATAAA TTCTCACCAA CTGATTTCCT GGCAAAAATG 661 GAGGAAGCAA ACATTCAACC AAATCGAGTG ACATACCAGA GATTGATTGC TTCTTATTGT 721 AATGTAGGAG ATATTGAAAG GTGCCAGCAA GATTCTTGGA TTTATGAAAA CTAAAGGATC 781 TCCCAGTTAC AGAGGCAGTA TTCAGTGCCC TTGTGACAGG GCATGCCAAG AGCTGGTGAT 841 AATGGAGAAT GCAGAAAAAC Agtgatgaga gatgccggaa ttgagcctgg tccagacaca 901 tacctcgcat tattgaatgc atatgctgag aagggcgaca ttgaccatgt taagcagact 961 ctggagaagg tggagaagtc cgagcttcac cttatggacc gtgatttact gcaaattatt 1021 tttagcttca gtaaagctgg gtatcctcag tatgtctcag aaattttgga aaaagttaca 1081 tgtgaaagaa gatatattcc agatgcaatg aacctcattt tacttttagt cactgaaaaa 1141 ttggaagatg tagcgttgca aattttacta gcatgccccg tatcaaagga agatggccca 1201 agtgtctttg gcagtttctt tttacaacac tgtgtgacta tgaatacgcc tgtggagaag 1261 ctaacagact actgtaagaa gttaaaggaa gtccagatgc actcctttcc tctgcagttc 1321 accctccatt gtgctttact cgccaataaa actgatttgg caaaagcctt aatgaaggct 1381 gtgaaggagg aaggttttcc tatcagacct cactatttct ggccattgct agttggacgt 1441 cggaaggaaa aaaatgttca aggtataatt gaaatcctca aaggaatgca agaattggga 1501 gtacatcctg atcaggaaac atatacagat tatgtgattc catgctttga tagtgtaaac 1561 tcagcacgag ccattttgca ggaaaatgga tgtctgtctg atagtgatat gttttctcaa 1621 gctggattga gaagtgaagc agcaaatggg aacttagact ttgtattatc atttttgaaa 1681 tcaaatacat tgcccatctc gctgcagtct ataagaagta gcctactgct aggcttcagg 1741 aggtctatga atataaatct ttggagcgag ataacagaat tgttgtacaa ggatggacgt 1801 tattgccagg agcctcgagg accgacggaa gctgttggct attttcttta taacttgatt 1861 gacagcatga gtgactcaga agtacaggcc aaggaggagc atttgagaca atacttccat 1921 cagctggaga agatgaatgt aaaaattcct gaaaatatct acagaggcat tcgtaatctc 1981 ctggaaagct accatgttcc tgaattgatt aaggatgctc acttgttggt tgagagtaag 2041 aatttagact ttcaaaaaac tgtgcaactt acatcatctg aattggagtc cacacttgaa 2101 acactaaaag ctgaaaatca acctataaga gatgtcctaa agcaactcat attagtgctt 2161 tgttcagaag agaatatgca aaaagccctt gaattgaaag caaaatatga atccgacatg 2221 gttactggtg gctatgcagc tttaataaat ttatgctgtc gacatgataa agtagaagat 2281 gccttgaact tgaaagaaga atttgaccgc ttagattcat ctgctgtcct tgacaccggc 2341 aagtatgtag gccttgtaag agtattggca aagcatggca agctccaaga tgctattaac 2401 attctgaagg agatgaaaga gaaggatgtt cttatcaaag atacaacagc cttgtccttt 2461 ttccacatgc taaatggcgc agctttaaga ggtgaaattg aaacagtaaa acagttgcat 2521 gaagccatcg tgactctagg gttagcagaa ccatccacca acataagttt cccattggtc 2581 actgtacact tggaaaaggg cgacctatct actgctcttg aggtcgccat tgactgctat 2641 gaaaagtata aagtattacc aaggattcat gatgtcttgt gtaaactggt agagaaaggc 2701 gagactgatc taattcagaa agcaatggac tttgtgagcc aagaacaagg tgaaatggtg 2761 atgctctatg atctcttctt tgccttccta caaacaggaa attacaaaga ggccaagaag 2821 atcattgaga ctccagggat tagagctcga tctgcaaggc ttcagtggtt ttgtgacaga 2881 tgtgttgcaa ataatcaggt tgaaactctg gaaaaattag tggagctgac acagaagcta 2941 tttgaatgtg atagagacca gatgtactac aatctgctaa aactgtataa aataaacggt 3001 gactggcaaa gagctgatgc agtctggaat aaaatccaag aagaaaatgt tattcctcgt 3061 gaaaagacat taagattatt agcagaaatc cttagagagg gtaaccagga agttccgttt 3121 gacgtacctg agttgtggta tgaagatgaa aaacattccc tgaattcttc gtcagcctca 3181 accacagaac ctgatttcca gaaagatata ttgattgcct gccgattgaa ccaaaaaaaa 3241 ggggcatatg atattttcct gaatgcaaaa gagcaaaaca ttgtgtttaa tgctgaaacc 3301 tacagcaatc tcattaaatt actgatgtca gaagattatt ttacacaagc aatggaagtg 3361 aaagcattcg cggagaccca catcaagggc ttcacactga acgatgctgc caacagccgc 3421 ctcatcataa cgcaagttag gcgggattat ttgaaagagg ctgtgacaac actgaaaaca 3481 gtattggatc agcagcagac cCGTTCTAGG TTAGCCAGTG ACCCGTGGTC ATCCAGGCAT 3541 TGGGCCATGA AAGGGTGATG TTGAAAACAT AGAAGTAGTT CAGAAGATGT TAAATGGACT 3601 CGAAGACTCC ATTGGACTTC AAAAATGGTT TTCATCAATA ACATTGCTTT GGCTCAAATA 3661 AAGAATAATA ACATAGATGC CGCAATAGAA AACATTGAAA ATATGCTTAC TTCAGAGAAT 3721 AAAGTCATTG AACCCCAATA CTTCGGCTTG GCATACTTAT TCAGAAAAGT AATAGAGGAG 3781 CAGTTGGAAC CAGCAGTTGA AAAGATAAGC ATCATGGCGG AGAGATTGGC CAATCAGTTT 3841 GCAATTTATA AACCTGTCAC TGATTTTTTC CTTCAACTTG TGGATGCAGG CAAGGTGGAT 3901 GATGCCAGAG CTCTCCTACA GAGATGTGGT GCAATTGCTG AACAAACCCC GATTTTGTTG 3961 TTGTTCCTCC TTAGGAATTC TAGGAAACAA GGAAAGGCAT CAACTGTGAA ATCTGTGTTA 4021 GAATTGATTC CTGAATTAAA TGAAAAGGAA GAAGCATACA ATTCCCTCAT GAAAAGCTAT 4081 GTCTCAGAGA AAGATGTCAC ATCTGCTAAA GCACTGTATG AACATTTGAC TGCAAAGAAT 4141 ACAAAATTGG ATGATCTGTT TCTAAAGCGT TACGCATCTT TGCTGAAGTA TGCTGGAGAG 4201 CCTGTCCCTT TCATTGAACC CCCTGAAAGC TTTGAATTTT ATGCACAGCA GCTAAGAAAA 4261 TTGAGGGAAA ACTCTTCTTT GCCAACTTTC TTGTACAAAG TTGGCATTAT AAGAAAGCAT 4321 TGCTTATCAA TTTGTTGCAA CGAACAGGTC ACTATCAGTC AAAATAAAAT CATTATTGCC 4381 ATCCAGCCGT TCAGCCG