Construct: ORF ccsbBroadEn_15024
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013182.2_s300c1, BRDN0000458546
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SHPK (23729)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23729 | SHPK | sedoheptulokinase | NM_013276.4 | 100% | 100% | |
| 2 | mouse | 74637 | Shpk | sedoheptulokinase | NM_029031.3 | 85.3% | 87.2% | (many diffs) |
| 3 | mouse | 74637 | Shpk | sedoheptulokinase | XR_003949525.1 | 38% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1500
- ORF length:
- 1434
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc tgcgcggccg atcaccctcg gcattgacct gggcaccaca tctgtgaagg 121 cagctctgct gagggccgcg cccgacgacc catccgggtt cgcagtgctg gcgagctgtg 181 cccgtgctgc gcgggcagag gcggcggtcg agagcgcggt ggccgggccc caggggcggg 241 agcaggatgt gagtagaatc ctccaagccc tacacgagtg ccttgctgcc cttccccgac 301 cccagctccg gagcgtcgtg ggcatcgggg tgtcgggcca gatgcatgga gtcgtgtttt 361 ggaaaacagg ccaaggctgt gaatggacag agggagggat taccccggtg ttcgagcccc 421 gagctgttag ccacctggtc acgtggcagg atggccgatg tagcagcgaa ttcctggcct 481 ctctgcccca gccgaagtct catctcagtg tggccacggg cttcggctgt gcaaccatct 541 tctggctttt gaaatatcgc ccagagttcc tgaagtccta cgacgcagcc ggtaccatcc 601 acgactatgt ggttgccatg ctgtgtggct tgccaagacc tctgatgtcc gaccagaatg 661 ctgccagctg gggctatttc aacacgcaga gccaaagctg gaacgtagag acactgagga 721 gctcgggttt tcctgtccac ctgctcccag acatcgccga gcctggcagt gtggcgggca 781 gaacttccca catgtggttt gaaatcccaa aggggacgca ggtgggagtg gccttgggtg 841 atttacaggc ctctgtctat tcctgcatgg cccagaggac agatgcagtt ctcaacatca 901 gcacctcggt tcagctggca gcctccatgc cttcaggatt ccagcctgca cagactccag 961 accctacggc cccagtcgcc tacttcccat acttcaacag gacctacctg ggggtggccg 1021 cgtcactcaa cgggggcaat gtgctggcca cgttcgtcca catgctggtt cagtggatgg 1081 cagatctagg cctggaggtt gaagaatcca ctgtgtattc acgcatgatt caggcagctg 1141 tgcagcagag agatacccac ctgaccatca ccccgacagt gctgggggag aggcacctgc 1201 cggaccagct ggcctcagtg accagaatct cctcctccga cctctccctg gggcacgtga 1261 cccgggctct gtgccgaggc attgttcaga acctgcactc catgcttccg attcagcagc 1321 tccaggagtg gggcgtggag agggtgatgg gcagtgggag tgcgctgtcc aggaatgacg 1381 tgctgaagca ggaggtgcag agggctttcc ctttgcccat gtcctttggg caggatgtgg 1441 atgcagctgt cggggcagct ctggtcatgc tccggagaca cctcaaccag aaggaatctt 1501 acccaacttt cttgtacaaa gttggcatta taagaaagca ttgcttatca atttgttgca 1561 acgaac