Construct: ORF ccsbBroadEn_15044

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018976.1_s300c1, BRDN0000458272
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
RPS6KA3 (6197)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 NM_014496.5 91% 28% (many diffs)
2 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 NM_001330512.1 87.9% 24.2% (many diffs)
3 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530917.2 87.9% 24.2% (many diffs)
4 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029423.2 86.2% 23.6% (many diffs)
5 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029424.1 86.2% 23.6% (many diffs)
6 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029425.1 86.2% 23.6% (many diffs)
7 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530919.2 77.6% 14.2% (many diffs)
8 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_011530920.2 75.2% 11.8% (many diffs)
9 human 27330 RPS6KA6 ribosomal protein S6 kinase A6 XM_017029426.1 59.8% 11.8% (many diffs)
10 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_011247707.2 79.4% 23% (many diffs)
11 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528404.2 77% 24.1% (many diffs)
12 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528403.2 71.8% 22.4% (many diffs)
13 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... NM_025949.3 70.1% 21.9% (many diffs)
14 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528400.3 70.1% 21.9% (many diffs)
15 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528401.3 70.1% 21.9% (many diffs)
16 mouse 67071 Rps6ka6 ribosomal protein S6 kinase... XM_006528402.2 69.7% 22% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
95
ORF end:
734
ORF length:
639
Sequence:
1AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCATGCTA CCATTCGCTC CTCAGGACGA
121GCCCTGGGAC CGAGAAATGG AAGTGTTCAG CGGCGGCGGC GCGAGCAGCG GCGAGGTAAA
181TGGTCTTAAA ATGGTTGATG AGCCAATGGA AGAGGGAGAA GCAGATTCTT GTCATGATGA
241AGGAGTTGTT AAAGAAATCC CTATTACTCA TCATGTTAAG GAAGGCTATG AGAAAGCAGA
301TCCTGCACAG TTTGAGTTGC TCAAGGTTCT TGGTCAGGGG TCATTTGGAA AGGTTTTTCT
361TGTTAGAAAG AAGACCGGTC CTGATGCTGG GCAGCTCTAT GCAATGAAGG TGTTAAAAAA
421AGCCTCTTTA AAAGTTCGAG ACAGAGTTCG GACAAAGATG GAGAGGGATA TACTGGTGGA
481AGTAAATCAT CCATTTATTG TCAAATTGCA CTATGCCTTT CAGACTGAAG GGAAACTGTA
541CTTAATACTG GATTTTCTCA GGGGAGGAGA TGTTTTCACA AGATTATCCA AAGAGGTTCT
601GTTTACAGAG GAAGATGTGA AATTCTACCT CGCAGAACTG GCCCTTGCTT TGGATCATCT
661GCACCAATTA GGAATTGTTT ATAGAGACCT GAAGCCAGAA AACATTTTGC TTGATGAAAT
721AGACATATCA AATTAACAGA TTTTGGACTC AGCAAGGAGT CAGTAGATCA AGAAAAGAAG
781CTTACTCATT TTGTGGTACA GTAGAGTATA TGGCTCCTGA AGTAGTAAAT AGGAGAGCAT
841CCCAGAGTGC TGATGGTGTT CATATGGTGT TCTTATGTTT GAATGCTTAC TGGTACTCTG
901CCATTTCAAG GTAAAGACAG AAATGAGAca atgactatga ttcttaaagc caaacttgga
961atgccacagt ttttgagtcc tgaagcgcag agtcttttac gaatgctttt caagcgaaat
1021cctgcaaaca gattaggtgc aggaccagat ggagttgaag aaattaaaag acattcattt
1081ttctcaacga tagactggaa taaactgtat agaagagaaa ttcatccgcc atttaaacct
1141gcaacgggca ggcctgaaga tacattctat tttgatcctg agtttactgc aaaaactccc
1201aaagattcac ctggcattcc acctagtgct aatgcacatc agctttttcg ggggtttagt
1261tttgttgcta ttacctcaga tgatgaaagc caagctatgc agacagttgg tgtacattca
1321attgttcagc agttacacag gaacagtatt cagtttactg atggatatga agtaaaagaa
1381gatattggag ttggctccta ctctgtttgc aagagatgta tacataaagc tacaaacatg
1441gagtttgcag tgaagattat tgataaaagc aagagagacc caacagaaga aattgaaatt
1501cttctGCGCT ATGGACAACA TCCCCAACCA TTTTTATACT TTGAGGATTC TTTGATGATG
1561GTAGATATGT TTACCTGTAC NGGATTAATG GAAAGGAGGA GAGTTACTTG ACCGTATTCT
1621CAACAAAAAA TGTTTTCTCG AACGGAGGGC TAGTGATATA CTATATGTAA TAAGTAAGAC
1681AGTGNACTAT CTTCATTGTC AAGGAGTTGT TCATCGTGAT CTTAAACNTA GTAATATNTT
1741ATACATGGAT GAATCAGCCA GTGCAGATTC AATCAGGATA TGTGATTTTG GGTTTGCAAA
1801ACAACTTCGA GGAGAAAATG GACTTCTCTT AACTCCATGC TACACTGCAA ACTTTGTTGC
1861ACCTGAGGTT CTTATGCAAC AGGGATATGA TGCTGCTTGT GATATCTGGA GTTTAGGAGT
1921CCTTTTTTAC ACAATGTTGG CTGGCTACAC TCCATTTGCT AATGGCCCCA ATGATACTCC
1981TGAAGAGATA CTGCTGCGTA TAGGCAATGG AAAATTCTCT TTGAGTGGTG GAAACTGGGA
2041CAATATTTCA GACGGAGCAA AGGATTTGCT TTCCCATATG CTTCATATGG ACCCACATCA
2101GCGGTATACT GCTGAACAAA TATTAAAGCA CTCATGGATA ACTCACAGAG ACCAGTTGCC
2161AAATGATCAG CCAAAGAGAA ATGATGTGTC ACATGTTGTT AAGGGAGCAA TGGTTGCAAC
2221ATACTCTGCC CTGACTCACA AGACCTTTCA ACCAGTCCTA GAGCCTGTAG CTGCTTCAAG
2281CTTAGCCCAG CGACGGAGCA TGAAAAAGCG AACATCAACT GGCCTGTTGC CAACTTTCTT
2341GTACAAAGTT GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG AACAGGTCAC
2401TATCAGTCAA AATAAAATCA TTATTGCCAT CCCAGCTGGA TAT

Download FASTA (ORF) (Full)

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