Construct: ORF ccsbBroadEn_15044
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018976.1_s300c1, BRDN0000458272
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- RPS6KA3 (6197)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | NM_014496.5 | 91% | 28% | (many diffs) |
| 2 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | NM_001330512.1 | 87.9% | 24.2% | (many diffs) |
| 3 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_011530917.2 | 87.9% | 24.2% | (many diffs) |
| 4 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_017029423.2 | 86.2% | 23.6% | (many diffs) |
| 5 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_017029424.1 | 86.2% | 23.6% | (many diffs) |
| 6 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_017029425.1 | 86.2% | 23.6% | (many diffs) |
| 7 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_011530919.2 | 77.6% | 14.2% | (many diffs) |
| 8 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_011530920.2 | 75.2% | 11.8% | (many diffs) |
| 9 | human | 27330 | RPS6KA6 | ribosomal protein S6 kinase A6 | XM_017029426.1 | 59.8% | 11.8% | (many diffs) |
| 10 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_011247707.2 | 79.4% | 23% | (many diffs) |
| 11 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_006528404.2 | 77% | 24.1% | (many diffs) |
| 12 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_006528403.2 | 71.8% | 22.4% | (many diffs) |
| 13 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | NM_025949.3 | 70.1% | 21.9% | (many diffs) |
| 14 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_006528400.3 | 70.1% | 21.9% | (many diffs) |
| 15 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_006528401.3 | 70.1% | 21.9% | (many diffs) |
| 16 | mouse | 67071 | Rps6ka6 | ribosomal protein S6 kinase... | XM_006528402.2 | 69.7% | 22% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 95
- ORF end:
- 734
- ORF length:
- 639
- Sequence:
-
1 AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCATGCTA CCATTCGCTC CTCAGGACGA 121 GCCCTGGGAC CGAGAAATGG AAGTGTTCAG CGGCGGCGGC GCGAGCAGCG GCGAGGTAAA 181 TGGTCTTAAA ATGGTTGATG AGCCAATGGA AGAGGGAGAA GCAGATTCTT GTCATGATGA 241 AGGAGTTGTT AAAGAAATCC CTATTACTCA TCATGTTAAG GAAGGCTATG AGAAAGCAGA 301 TCCTGCACAG TTTGAGTTGC TCAAGGTTCT TGGTCAGGGG TCATTTGGAA AGGTTTTTCT 361 TGTTAGAAAG AAGACCGGTC CTGATGCTGG GCAGCTCTAT GCAATGAAGG TGTTAAAAAA 421 AGCCTCTTTA AAAGTTCGAG ACAGAGTTCG GACAAAGATG GAGAGGGATA TACTGGTGGA 481 AGTAAATCAT CCATTTATTG TCAAATTGCA CTATGCCTTT CAGACTGAAG GGAAACTGTA 541 CTTAATACTG GATTTTCTCA GGGGAGGAGA TGTTTTCACA AGATTATCCA AAGAGGTTCT 601 GTTTACAGAG GAAGATGTGA AATTCTACCT CGCAGAACTG GCCCTTGCTT TGGATCATCT 661 GCACCAATTA GGAATTGTTT ATAGAGACCT GAAGCCAGAA AACATTTTGC TTGATGAAAT 721 AGACATATCA AATTAACAGA TTTTGGACTC AGCAAGGAGT CAGTAGATCA AGAAAAGAAG 781 CTTACTCATT TTGTGGTACA GTAGAGTATA TGGCTCCTGA AGTAGTAAAT AGGAGAGCAT 841 CCCAGAGTGC TGATGGTGTT CATATGGTGT TCTTATGTTT GAATGCTTAC TGGTACTCTG 901 CCATTTCAAG GTAAAGACAG AAATGAGAca atgactatga ttcttaaagc caaacttgga 961 atgccacagt ttttgagtcc tgaagcgcag agtcttttac gaatgctttt caagcgaaat 1021 cctgcaaaca gattaggtgc aggaccagat ggagttgaag aaattaaaag acattcattt 1081 ttctcaacga tagactggaa taaactgtat agaagagaaa ttcatccgcc atttaaacct 1141 gcaacgggca ggcctgaaga tacattctat tttgatcctg agtttactgc aaaaactccc 1201 aaagattcac ctggcattcc acctagtgct aatgcacatc agctttttcg ggggtttagt 1261 tttgttgcta ttacctcaga tgatgaaagc caagctatgc agacagttgg tgtacattca 1321 attgttcagc agttacacag gaacagtatt cagtttactg atggatatga agtaaaagaa 1381 gatattggag ttggctccta ctctgtttgc aagagatgta tacataaagc tacaaacatg 1441 gagtttgcag tgaagattat tgataaaagc aagagagacc caacagaaga aattgaaatt 1501 cttctGCGCT ATGGACAACA TCCCCAACCA TTTTTATACT TTGAGGATTC TTTGATGATG 1561 GTAGATATGT TTACCTGTAC NGGATTAATG GAAAGGAGGA GAGTTACTTG ACCGTATTCT 1621 CAACAAAAAA TGTTTTCTCG AACGGAGGGC TAGTGATATA CTATATGTAA TAAGTAAGAC 1681 AGTGNACTAT CTTCATTGTC AAGGAGTTGT TCATCGTGAT CTTAAACNTA GTAATATNTT 1741 ATACATGGAT GAATCAGCCA GTGCAGATTC AATCAGGATA TGTGATTTTG GGTTTGCAAA 1801 ACAACTTCGA GGAGAAAATG GACTTCTCTT AACTCCATGC TACACTGCAA ACTTTGTTGC 1861 ACCTGAGGTT CTTATGCAAC AGGGATATGA TGCTGCTTGT GATATCTGGA GTTTAGGAGT 1921 CCTTTTTTAC ACAATGTTGG CTGGCTACAC TCCATTTGCT AATGGCCCCA ATGATACTCC 1981 TGAAGAGATA CTGCTGCGTA TAGGCAATGG AAAATTCTCT TTGAGTGGTG GAAACTGGGA 2041 CAATATTTCA GACGGAGCAA AGGATTTGCT TTCCCATATG CTTCATATGG ACCCACATCA 2101 GCGGTATACT GCTGAACAAA TATTAAAGCA CTCATGGATA ACTCACAGAG ACCAGTTGCC 2161 AAATGATCAG CCAAAGAGAA ATGATGTGTC ACATGTTGTT AAGGGAGCAA TGGTTGCAAC 2221 ATACTCTGCC CTGACTCACA AGACCTTTCA ACCAGTCCTA GAGCCTGTAG CTGCTTCAAG 2281 CTTAGCCCAG CGACGGAGCA TGAAAAAGCG AACATCAACT GGCCTGTTGC CAACTTTCTT 2341 GTACAAAGTT GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG AACAGGTCAC 2401 TATCAGTCAA AATAAAATCA TTATTGCCAT CCCAGCTGGA TAT