Construct: ORF ccsbBroadEn_15091
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018855.1_s300c1, BRDN0000458151
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PANK4 (55229)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55229 | PANK4 | pantothenate kinase 4 (inac... | NM_018216.4 | 72.9% | 4.4% | (many diffs) |
| 2 | human | 55229 | PANK4 | pantothenate kinase 4 (inac... | XR_241034.3 | 64.4% | (many diffs) | |
| 3 | human | 55437 | STRADB | STE20 related adaptor beta | XM_005246669.2 | 22.6% | 41.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 104
- ORF end:
- 515
- ORF length:
- 411
- Sequence:
-
1 NANNNNNTNA TTTTNANTNN NANTGANNNT GACCTGTTCG TTGCAACAAA TTGATGAGCA 61 ATGCTTTTTT ATAATGCCAA CTTTGTACAA AAAAGTTGGC ACCATGAAAA ACAAGTCTGA 121 AACCAGTATC CATCAATACT TGGTCGAAGA GCCAACCCTT TCCTGGTCGC CTCCATCCAC 181 TAGAGCCAGT GAAGTAGTAT GTTCCGCCAA CGTTTCTCAC TACGAGCTCC AAGTAGAAAT 241 AGGAAGAGGA TTTGACAAGT TGACTTCTGT CCATCTAGCA CGGCATACTC CTACGGGAAC 301 GCTGGTAACT ACAAAAATTA CAAATCTGGA AAACGGCAAT AAAGAACGCC TGAAAGTTTT 361 ACAGAAAGCC ATGATTCTAT CCCACTTTTT CCGGCATCCC AATATTACAA CTTATTGGAC 421 AGTTTTCACT GTTGGCAGCT GGCTTTGGGT TATTTCTCCA TTTATGGCCT ATGGTTCAGC 481 AAGACAACTC TTGAGGACCT ATTTTCACAG TAAATAGTGA CCGATTACAC ACACCATCCT 541 CAAAAACCTT CTCTCCTGCC TTCTTTAGCT GGGTACAGCT GTGTTTGCAA CAAGATCCGG 601 AGAAAAGGCC ATCAGCAAGC AGTTTATTGT CCCATGTTTT CTTCAAACAG ATGAAAGAAG 661 AAAGCCAGGA TTCGGTACTT TCACTGTTGC CTCCTGCTTA TAACAAGCCA TCAATATCAC 721 TGCCTCCGGT GTTANCNTGG ACTGAGCCAG AATGTGGTTT TCCTNNTNNA NCTNGNTNCA 781 TATTGGGNNT NNNTNNNNAA CAAGATCCGG AGAAAAGGCC ATCAGCAAGC AGTTTATTGT 841 CCCATGNTTT CTTNNANAAA GTTGGCATTA NAGATGAAAG AAGAAAGCCA GNATNCNNAT 901 CATTTGTGCA CGACAGTCAC TATCAGTCAA ATNACTTTCA CTGTTGCCTC CTGCTTATAA 961 CAAGCCATCA NTATNACTGC NTCNGNTGNT NCCTTGGACT GAGCNANAAN GTGGTTTTCC 1021 NGNNGNATAN ANATTCATAT TGGGAATTCT TGCCAACTTT CTTGTACAAA GTTGGCATTA 1081 TAAGAAAGCA TTGCTTATCA ATTTGTTGCA ACGAACAGGT CACTATCAGT CAAAATAAAA 1141 TCATTATTGC CATCCAGCGA TCCTAAacct ggcctcgagg ggccagcaca gcaatgtgga 1201 catgctggtg cgggacgtct acggcggcgc ccaccagact ctcgggctga gcgggaacct 1261 catcgccagc agcttcggga agtcggccac cgccgaccaa gagttctcca aagaagacat 1321 ggcgaagagc ctgctgcaca tgatcagcaa cgacattggg cagctggcct gcctccacgc 1381 acggctgcac agcctggacc gcgtgtactt tggaggcttc tttatccggg gccaccccgt 1441 gaccatgcgc accatcacct atagcatcaa cttcttctcc aagggggaag tgcaggcgct 1501 gtttctgagg cacgaaggct acctgggagc catcggagcg ttcctgaaag gagctgagca 1561 ggacaatcct aaccagtaca gctggggaga gaactatgca ggcagctccg ggctgatgag 1621 tgcatcaccc gagctcggcc cggcgcagcg ggcgcggagt ggcacttttg acttgctgga 1681 aatggaccgg ctggagaggc cactggttga cctgccgctc ctcctggacc cgccctccta 1741 cgtgcccgac acggtggacc tcaccgatga cgctctggcc cgaaaatact ggctcacctg 1801 ctttgaggag gccctggacg gggtagtgaa gcgcgcagtg gcgagccagc cagactctgt 1861 ggatgcagcc gagagggcgg agaagttccg gcagaagtac tggaacaagc ttcagaccct 1921 gaggcagcag cccttcgcct atgggaccct gaccgtgcgc agcctgctgg acaccaggga 1981 gcactgtctg aacgagttca acttcccgga tccctactcc aaagtgaagc agcgggagaa 2041 tggcgtggcg ctgaggtgct tccccggggt cgtgcgctcc ctggacgcgc tgggctggga 2101 ggaacggcag ctggcgctgg tgaaaggcct cctggcgggg aatgtcttcg actggggggc 2161 caaagccgtg tctgctgtcc ttgaatccga cccctacttt gggtttgaag aagcaaagag 2221 gaagttacaa gaaagaccct ggctcgtgga ttcctacagc gagtggcttc agagattaaa 2281 ggggccccct cataaatgtg ccttaatttt cgcagataac agtggaatag acatcatttt 2341 gggagtcttc ccctttgtca gggagctact ccttagaggg acagaggtca tcctggcgtg 2401 caactcaggc cccgccctga acgacgtgac ccacagcgag tccctcatcg tggcagagcg 2461 tattgcgggc atggaccctg tcgtgcactc tgcgctccag gaagagaggc tgctgctggt 2521 gcagacgggc tccagctccc cgtgcctcga cctcagccgc ctggataagg ggctggccgc 2581 actggtgcgg gagcgtggcg cggatctggt ggtcatcgag ggcatgggcc gtgctgtcca 2641 cacaaactac cacgcagccc tgcgctgcga gagcctcaag ctggccgtca tcaagaacgc 2701 gtggctggcc gagcggctgg gcggccggct cttcagcgtc atcttcaagt acgaggtccc 2761 agccgagttg ccaactttct tgtacaaagt tggcattata agaaagcatt gcttatcaat 2821 ttgttgcaac gaac