Construct: ORF ccsbBroadEn_15248

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017457.1_s300c1, BRDN0000385744
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NDUFAF6 (137682)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NM_152416.4 34.9% 7% (many diffs)
2 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148910.1 20% (many diffs)
3 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148912.1 18.1% (many diffs)
4 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148911.1 18% (many diffs)
5 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148915.1 15.6% (many diffs)
6 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148913.2 10% (many diffs)
7 human 137682 NDUFAF6 NADH:ubiquinone oxidoreduct... NR_148914.2 9.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
333
ORF length:
267
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCCTCGTGC ACGGCTCTGT CTGGGGGCCG TTGCGGCTTG GCATCCCCGG
121CCTGTGCTGC Cgccggccgc ctctgggtct gtacgcgcgc atgcggcggc tgcccgggCC
181GGAGGTGTCT GGGCGGAGCG TGGCTGCGGC CAGCGGACCG GGCGCCTGGG GCACTGACCA
241CTACTGCCTG GAGCTGCTGC GGAAACGGGA TTATGAAGGT TATTTATGCT CCCTGCTGCT
301CCCTGCAGAA TCCCGAAGCT CTGTTTTTGC ACTGAGGGCC TTTAATGTGG AACTGGCTCA
361GGCTGGATTA CTCTTGCTGC TGTCTTGCTG TACTGTATGC CACTGGGATC TGAACACTAA
421ACATTGCAAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat
481ttgttgcaac gaac

Download FASTA (ORF) (Full)