Construct: ORF ccsbBroadEn_15326
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014536.1_s300c1, BRDN0000394997
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM74A4 (401508)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 653123 | FAM74A6 | family with sequence simila... | NR_110999.1 | 46.4% | (many diffs) | |
| 2 | human | 401507 | FAM74A1 | family with sequence simila... | NR_026803.2 | 42.9% | (many diffs) | |
| 3 | human | 401508 | FAM74A4 | family with sequence simila... | NR_026802.1 | 19.3% | (many diffs) | |
| 4 | human | 728495 | FAM74A3 | family with sequence simila... | NR_026801.1 | 18.9% | (many diffs) | |
| 5 | human | 100996582 | FAM74A7 | family with sequence simila... | NR_126166.1 | 18.7% | (many diffs) | |
| 6 | human | 401508 | FAM74A4 | family with sequence simila... | NR_110998.1 | 18.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 438
- ORF length:
- 369
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGGAGGGAG CTCAGAGGCT GTCCTGGAGG AGACGTGGAG ACAGCTCAGA 121 GGCTGTCCCA GAGAAGACGT GGAAAGAGCT CAGAGGCTGT CCCAGAGAAG ACGTGGAGAG 181 CTCAGAGGAT GTCCCAGAGA AGACGTGGAG AGAGTTCAGA GGCTGTCCCG GAGAAGATGT 241 GGAGAGAGTT CAGAaactca gagactgtcc cggagaagac atggaaacag ctcagaggct 301 gtctgcaAGA AGACGTGGAG AGAGTTCAGA GGCTGTCCCG GAGAAGATGT GGAGGGAGCT 361 CAAAGGCTGT CCANNAGAAG ATGTGGAGAG AGTTCAGAGG CTGTCGTTAC TGCTGCACTT 421 GGCTGTTTTT CTTTGGATTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 481 gcttatcaat ttgttgcaac gaac