Construct: ORF ccsbBroadEn_15335
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018827.1_s300c1, BRDN0000458123
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AK4P6 (649288)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 205 | AK4 | adenylate kinase 4 | NM_001330616.2 | 40.3% | 37% | (many diffs) |
| 2 | human | 205 | AK4 | adenylate kinase 4 | XM_017000613.1 | 40.3% | 37% | (many diffs) |
| 3 | human | 205 | AK4 | adenylate kinase 4 | NM_001005353.2 | 40.2% | 35.4% | (many diffs) |
| 4 | human | 205 | AK4 | adenylate kinase 4 | NM_013410.4 | 40.2% | 35.4% | (many diffs) |
| 5 | human | 205 | AK4 | adenylate kinase 4 | NM_203464.2 | 40.2% | 35.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 507
- ORF end:
- 798
- ORF length:
- 291
- Sequence:
-
1 NNNNATTNNN NNNNNNNNGN NNGTNNCNNT GTATCAGTGA TGAAGTTCCA GTAACTTTAC 61 ATACTGCAGA TCTTGGAATT CCAGGATGCG AATGCAGAGC GACTGCTTCA CAGAAGAGAT 121 ATATGTTATG CAACTCAACT CTGCAGCACG TGATGATATA CTGAGGCTCA GTCATTGAGG 181 ATAGGGTAGG AAACTTTTTC TTTGTGTCTT TTAGCGGATG CATACGACTG ATGTTATATG 241 ATCTCAGCAA TTAAATAGAG CACAAGGAGA GTAGCATCTA TTTCTGTTTC TTTATGGACG 301 TCTTTATTTT TTTTTTCTTA GTTTCTTAGA GACTGACCCG TTCGTTCTTT CCTTCATCCC 361 AGTCACGACG ATACGACACG ACGGCCAGTA TTAAGGCCGG GCCCCAAATA ATGATTTTAT 421 TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT TTTATAATGC 481 CAACTTTGTA CAAAAAAGTT GGCACCATGG AAGTCTTGGA ATCATTTACC AAGAAGATCC 541 TGAGCACAGA AGTTGGTGAG ATGGCAAAGC AGTATATAGA GAAAAGTCTT TTGGTTCCAG 601 ACCATGTGAT CACATACCTA ATGATGTCTG AGTTGGAGAA TAGGTGTGGC CAGCACTGGC 661 TCCTCGATGG TTTTCCTAGG ACATTAGGAC AAGCCGAAGC CCTGGACAAA ATCTGTGAAG 721 TGGATCTAGT GATCAGTTTG AACATTCCAT TTGAAACACT TAAAAGATCG TCTCAGCCGC 781 CGTTGGATTC ACCCTCCTTG CCAACTTTCT TGTACAAAGT TGGCATTATA AGAAAGCATT 841 GCTTATCAAT TTGTTGCAAC GAACAGGTCA CTATCAGTCA AAATAAAATC NNTNNTTGCN 901 ATNCNNNNNN NATNCCNNAT AGTGAGTCGT ATTACATGGT CATAGCTGTT TCCTGGCAGC 961 TCTGGCCCGT GTAACAAAAT CTCGGAATGT TACAAAATTC GAGACTGGGG AGGAAATGTC 1021 ACGCCGATGC TTGAAAGCCC AAAAAAGTTA GCCTCCCTTG CTTACTATAT TTATTTAGAC 1081 CTTGCTTCGT TCTTAAGGTA CTGAACACAC TCAATAAAAA TGCCCTGCAG AGCGCTTGCG 1141 GAGGATGTGA TATGAACTTG TAACTTCCGT TCGGGATCAC ATGCCGAATC ACATGTGATA 1201 TGATCAGCAT TCCCAGTCCC TTACTTCGAC GACGTAGTGG CTTCCCTGGT GCTGCGCTCG 1261 AGATTGATGT GATCTGTCTA CCACCTCCTA TCTCCGATCG AAGTCCCTAG CATGGGAAGA 1321 CCATAGGTTT A