Construct: ORF ccsbBroadEn_15377

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001394.1_s300c1, BRDN0000391728
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CBS (875)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 875 CBS cystathionine beta-synthase NM_000071.2 99.9% 99.8% 205G>C
2 human 875 CBS cystathionine beta-synthase NM_001178008.2 99.9% 99.8% 205G>C
3 human 875 CBS cystathionine beta-synthase NM_001178009.3 99.9% 99.8% 205G>C
4 human 875 CBS cystathionine beta-synthase NM_001320298.1 99.9% 99.8% 205G>C
5 human 875 CBS cystathionine beta-synthase XM_017028491.2 99.9% 99.8% 205G>C
6 human 102724560 CBSL cystathionine beta-synthase... NM_001321073.2 99.8% 99.8% 205G>C;699T>C
7 human 102724560 CBSL cystathionine beta-synthase... NM_001354006.1 99.8% 99.8% 205G>C;699T>C
8 human 102724560 CBSL cystathionine beta-synthase... NM_001354007.1 99.8% 99.8% 205G>C;699T>C
9 human 102724560 CBSL cystathionine beta-synthase... NM_001354008.1 99.8% 99.8% 205G>C;699T>C
10 human 102724560 CBSL cystathionine beta-synthase... NM_001354009.1 99.8% 99.8% 205G>C;699T>C
11 human 102724560 CBSL cystathionine beta-synthase... NM_001354010.1 99.8% 99.8% 205G>C;699T>C
12 human 102724560 CBSL cystathionine beta-synthase... NM_001354012.1 99.8% 99.8% 205G>C;699T>C
13 human 875 CBS cystathionine beta-synthase XM_011529777.2 97.4% 97.1% 205G>C;1553_1594del
14 human 102724560 CBSL cystathionine beta-synthase... NM_001354014.1 97.4% 97.1% 205G>C;699T>C;1553_1594del
15 human 102724560 CBSL cystathionine beta-synthase... NM_001354015.1 97.4% 97.1% 205G>C;699T>C;1553_1594del
16 human 875 CBS cystathionine beta-synthase XM_024452137.1 85.3% 77.8% (many diffs)
17 human 102724560 CBSL cystathionine beta-synthase... XM_017028209.1 85.1% 77.8% (many diffs)
18 human 102724560 CBSL cystathionine beta-synthase... XM_017028210.1 85.1% 77.8% (many diffs)
19 human 875 CBS cystathionine beta-synthase XM_011529774.2 83.3% 75.9% (many diffs)
20 human 875 CBS cystathionine beta-synthase XM_024452136.1 83.3% 75.9% (many diffs)
21 human 875 CBS cystathionine beta-synthase NM_001321072.1 80.8% 80.7% 1_1delAins316
22 human 875 CBS cystathionine beta-synthase XM_024452138.1 80.8% 80.7% 1_1delAins316
23 human 875 CBS cystathionine beta-synthase XM_024452139.1 80.8% 80.7% 1_1delAins316
24 human 875 CBS cystathionine beta-synthase XM_024452140.1 80.8% 80.7% 1_1delAins316
25 human 875 CBS cystathionine beta-synthase XR_001754917.2 80.8% (many diffs)
26 human 875 CBS cystathionine beta-synthase XM_011529783.2 78.8% 78.5% 1_1delAins316;1238_1279del
27 human 875 CBS cystathionine beta-synthase XR_001754916.2 67.8% (many diffs)
28 human 102724560 CBSL cystathionine beta-synthase... NR_148682.1 60.6% (many diffs)
29 human 875 CBS cystathionine beta-synthase XR_001754915.1 53.1% (many diffs)
30 human 875 CBS cystathionine beta-synthase XR_002958634.1 47.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1719
ORF length:
1653
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgcc ttctgagacc ccccaggcag aagtggggcc cacaggctgc ccccaccgct
121cagggccaca ctcggcgaag gggagcctgg agaaggggtc cccagaggat aaggaagcca
181aggagcccct gtggatccgg cccgatgctc cgagcaggtg cacctggcag ctgggccggc
241ctgcctccga gtccccacat caccacactc ccccggcaaa atctccaaaa atcttgccag
301atattctgaa gaaaatcggg gacaccccta tggtcagaat caacaagatt gggaagaagt
361tcggcctgaa gtgtgagctc ttggccaagt gtgagttctt caacgcgggc gggagcgtga
421aggaccgcat cagcctgcgg atgattgagg atgctgagcg cgacgggacg ctgaagcccg
481gggacacgat tatcgagccg acatccggga acaccgggat cgggctggcc ctggctgcgg
541cagtgagggg ctatcgctgc atcatcgtga tgccagagaa gatgagctcc gagaaggtgg
601acgtgctgcg ggcactgggg gctgagattg tgaggacgcc caccaatgcc aggttcgact
661ccccggagtc acacgtgggg gtggcctggc ggctgaagaa cgaaatcccc aattctcaca
721tcctagacca gtaccgcaac gccagcaacc ccctggctca ctacgacacc accgctgatg
781agatcctgca gcagtgtgat gggaagctgg acatgctggt ggcttcagtg ggcacgggcg
841gcaccatcac gggcattgcc aggaagctga aggagaagtg tcctggatgc aggatcattg
901gggtggatcc cgaagggtcc atcctcgcag agccggagga gctgaaccag acggagcaga
961caacctacga ggtggaaggg atcggctacg acttcatccc cacggtgctg gacaggacgg
1021tggtggacaa gtggttcaag agcaacgatg aggaggcgtt cacctttgcc cgcatgctga
1081tcgcgcaaga ggggctgctg tgcggtggca gtgctggcag cacggtggcg gtggccgtga
1141aggccgcgca ggagctgcag gagggccagc gctgcgtggt cattctgccc gactcagtgc
1201ggaactacat gaccaagttc ctgagcgaca ggtggatgct gcagaagggc tttctgaagg
1261aggaggacct cacggagaag aagccctggt ggtggcacct ccgtgttcag gagctgggcc
1321tgtcagcccc gctgaccgtg ctcccgacca tcacctgtgg gcacaccatc gagatcctcc
1381gggagaaggg cttcgaccag gcgcccgtgg tggatgaggc gggggtaatc ctgggaatgg
1441tgacgcttgg gaacatgctc tcgtccctgc ttgccgggaa ggtgcagccg tcagaccaag
1501ttggcaaagt catctacaag cagttcaaac agatccgcct cacggacacg ctgggcaggc
1561tctcgcacat cctggagatg gaccacttcg ccctggtggt gcacgagcag atccagtacc
1621acagcaccgg gaagtccagt cagcggcaga tggtgttcgg ggtggtcacc gccattgact
1681tgctgaactt cgtggccgcc caggagcggg accagaagtn nccaactttc ttgtacaaag
1741ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.