Construct: ORF ccsbBroadEn_15499

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006195.1_s300c1, BRDN0000395567
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD99 (4267)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4267 CD99 CD99 molecule (Xg blood group) NM_002414.5 99.8% 100% 87C>T
2 human 4267 CD99 CD99 molecule (Xg blood group) NM_001321368.2 99.2% 99.4% 87C>T;474_475insGCA
3 human 4267 CD99 CD99 molecule (Xg blood group) NM_001122898.3 91.1% 91.3% 87C>T;97_98ins48
4 human 4267 CD99 CD99 molecule (Xg blood group) NM_001321369.2 90.6% 90.8% 87C>T;97_98ins48;426_427insGCA
5 human 4267 CD99 CD99 molecule (Xg blood group) NM_001321370.2 90.6% 90.8% 87C>T;309_310ins51
6 human 4267 CD99 CD99 molecule (Xg blood group) NM_001321367.2 86.1% 85.4% 87C>T;475_476insCAGAACAAGGGGAGGTGGAC;480_480delCins56
7 human 4267 CD99 CD99 molecule (Xg blood group) NR_135623.2 48.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
621
ORF length:
555
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggc ccgcggggct gcgctggcgc tgctgctctt cggcctgctg ggtgttctgg
121tcgccgcccc ggatggtggt ttcgatttat ctgatgccct tcctgacaat gaaaacaaga
181aacccactgc aatccccaag aaacccagtg ctggggatga ctttgactta ggagatgctg
241ttgttgatgg agaaaatgac gacccacgac caccgaaccc acccaaaccg atgccaaatc
301caaaccccaa ccaccctagt tcctccggta gcttttcaga tgctgacctt gcggatggcg
361tttcaggtgg agaaggaaaa ggaggcagtg atggtggagg cagccacagg aaagaagggg
421aagaggccga cgccccaggc gtgatccccg ggattgtggg ggctgtcgtg gtcgccgtgg
481ctggagccat ctctagcttc attgcttacc agaaaaagaa gctatgcttc aaagaaaatg
541cagaacaagg ggaggtggac atggagagcc accggaatgc caacgcagag ccagctgttc
601agcgtactct tttagagaaa tnnccaactt tcttgtacaa agttggcatt ataagaaagc
661attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)