Construct: ORF ccsbBroadEn_15555
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001399.1_s300c1, BRDN0000390812
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRF (5792)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_001329140.1 | 18.7% | 14.7% | (many diffs) |
| 2 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001946.1 | 18.6% | 14.3% | (many diffs) |
| 3 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_001329138.1 | 18.4% | 14.3% | (many diffs) |
| 4 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_001329139.1 | 18.4% | 14.5% | (many diffs) |
| 5 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001949.1 | 18.4% | 14.5% | (many diffs) |
| 6 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_001329137.1 | 18.4% | 14.4% | (many diffs) |
| 7 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710801.3 | 17.5% | 13.5% | (many diffs) |
| 8 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001944.1 | 16.8% | 13% | (many diffs) |
| 9 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710800.3 | 16.7% | 12.9% | (many diffs) |
| 10 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_005271082.3 | 16.7% | 13.1% | (many diffs) |
| 11 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710799.3 | 16.6% | 12.9% | (many diffs) |
| 12 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001945.1 | 16.6% | 13% | (many diffs) |
| 13 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001943.1 | 16.5% | 13% | (many diffs) |
| 14 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710798.3 | 15.9% | 12.3% | (many diffs) |
| 15 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710797.3 | 15.8% | 12.3% | (many diffs) |
| 16 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710796.3 | 15.8% | 12.2% | (many diffs) |
| 17 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_130440.3 | 15.8% | 12.4% | (many diffs) |
| 18 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_005271079.3 | 15.7% | 12.2% | (many diffs) |
| 19 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_006710795.3 | 15.7% | 12.2% | (many diffs) |
| 20 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_011541871.3 | 15.7% | 12.2% | (many diffs) |
| 21 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_011541872.3 | 15.7% | 12.2% | (many diffs) |
| 22 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_011541873.2 | 15.7% | 12.2% | (many diffs) |
| 23 | human | 5792 | PTPRF | protein tyrosine phosphatas... | NM_002840.5 | 15.7% | 12.4% | (many diffs) |
| 24 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_005271081.3 | 15.7% | 12.4% | (many diffs) |
| 25 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_005271080.3 | 15.6% | 12.3% | (many diffs) |
| 26 | human | 5792 | PTPRF | protein tyrosine phosphatas... | XM_017001942.2 | 14.8% | 10.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1107
- ORF length:
- 1041
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc ccctgagcca gccccaggga ggacgatggt gccccttgtg cctgcactgg 121 tgatgcttgg tttggtggca ggcgcccatg gtgacagcaa acctgtcttc attaaagtcc 181 ctgaggacca gactgggctg tcaggagggg tagcctcctt cgtgtgccaa gctacaggag 241 aacccaagcc gcgcatcaca tggatgaaga aggggaagaa agtcagctcc cagcgcttcg 301 aggtcattga gtttgatgat ggggcagggt cagtgcttcg gatccagcca ttgcgggtgc 361 agcgagatga agccatctat gagtgtacag ctactaacag cctgggtgag atcaacacta 421 gtgccaagct ctcagtgctc gaagaggaac agctgccccc tgggttccct tccatcgaca 481 tggggcctca gctgaaggtg gtggagaagg cacgcacagc caccatgcta tgtgctgcag 541 gcggaaatcc agaccctgag atttcttggt tcaaggactt ccttcctgta gaccctgcca 601 cgagcaacgg ccgcatcaag cagctgcgtt caggtgcctt gcagatagag agcagtgagg 661 aatccgacca aggcaagtac gagtgtgtgg cgaccaactc ggcaggcaca cgttactcag 721 cccctgcgaa cctgtatgtg cgaggtaagg actcaggcag tgcctggccc ctgtcaccac 781 agagctgtgc tgcacctgcc gggctctctg cccagagccc ttggtgcaga cacgcaaggg 841 actgccatgg gcccagtctc ttctccttcc tgcttctttc tgcagcagca gcaacagctc 901 ccactgggca agttcctggc gtctgccact acttcgcctt ccttccttgc aggcccatgg 961 ggaagcagcc actcttggga gcatttgtat cttttgtagg tcttgccgca tgggcccgga 1021 gccccatggg aatttggagc catccaatcc gacttcttgg tgtatgtgca tgtgtgtgtg 1081 cacacacggg cacacttatc tgtgtgtnnc caactttctt gtacaaagtt ggcattataa 1141 gaaagcattg cttatcaatt tgttgcaacg aac