Construct: ORF ccsbBroadEn_15623
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006031.1_s300c1, BRDN0000390799
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MZF1 (7593)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7593 | MZF1 | myeloid zinc finger 1 | NM_001267033.2 | 99.8% | 99.6% | 152G>A |
| 2 | human | 7593 | MZF1 | myeloid zinc finger 1 | NM_003422.2 | 39.4% | 36.3% | 152G>A;767_1010del;1115_2202del |
| 3 | human | 7593 | MZF1 | myeloid zinc finger 1 | NM_198055.2 | 39.4% | 36.3% | 152G>A;767_1010del;1115_2202del |
| 4 | human | 7593 | MZF1 | myeloid zinc finger 1 | XM_011527264.3 | 37.9% | 34.9% | (many diffs) |
| 5 | human | 7593 | MZF1 | myeloid zinc finger 1 | XM_005259204.3 | 37.3% | 34.4% | (many diffs) |
| 6 | human | 7593 | MZF1 | myeloid zinc finger 1 | XM_024451689.1 | 37.3% | 34.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgag gcctgcggtg ctgggctccc cagaccgagc acccccagaa gatgaggggc 121 ctgtcatggt gaagctagag gactctgagg aggagggtga ggctgcctta tgggacccag 181 gccctgaagc tgcacgcctg cgtttccggt gcttccacta tgaggaggcc acagggcccc 241 aagaggccct ggcccagctc cgagagctgt gtcgccagtg gctgcgtcca gaggtacgct 301 ccaaggagca gatgctggag ctgttggtgc tggagcagtt cctgggcgca ctgccccctg 361 agatccaggc ccgtgtgcag gggcagcggc caggcagccc cgaggaggct gctgccctag 421 tagatgggct gcgccgggag ccgggcggac cccggagatg ggtcacagtc caggtgcagg 481 gccaggaggt cctatcagag aagatggagc cctccagttt ccagccccta cctgaaactg 541 agcctccaac tccagagcct gggcccaaga cacctcctag gactatgcag gaatcaccac 601 tgggcctgca ggtgaaagag gagtcagagg ttacagagga ctcagatttc ctggagtctg 661 ggcctctagc tgccacccag gagtctgtac ccaccctcct gcctgaggag gcccagagat 721 gtgggaccgt gctggaccag atctttcccc acagcaagac tgggcctgag ggtccctcat 781 ggagggagca ccccagggcc ctgtggcatg aggaagctgg gggcatcttc tccccagggg 841 ccggagccgg ggccgcccca gcactggggg cggggtggtt aggggcggcc gttgcgatgt 901 atgtggcaag gtgttcagcc aacgcagcaa cctgctnncc aactttcttg tacaaagttg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac