Construct: ORF ccsbBroadEn_15625
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003443.1_s300c1, BRDN0000394942
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF195 (7748)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_007152.5 | 100% | 100% | |
| 2 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242843.2 | 99.1% | 99.1% | 1_13del;14_15insT |
| 3 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256825.1 | 99.1% | 99.1% | 1_13del;14_15insT |
| 4 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242842.2 | 95.2% | 95.2% | 1_13del;14_15insT;237_305del |
| 5 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256824.2 | 93.9% | 93.9% | 1_13del;14_15insT;236_328del |
| 6 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001130519.3 | 91.9% | 91.9% | 226_372del |
| 7 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242841.2 | 91.2% | 91.1% | 1_13del;14_15insT;238_384del |
| 8 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001130520.3 | 88.5% | 88.5% | 225_440del |
| 9 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_046382.2 | 52.8% | 1_293del;294_295insT;1964_3157del | |
| 10 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_046381.2 | 51.2% | (many diffs) | |
| 11 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_040083.2 | 50% | 1_471del;472_473insT;2142_3335del | |
| 12 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256823.2 | 14.8% | 13.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1740
- ORF length:
- 1671
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gactctgttg acgttcaggg atgtggccat agaattctcc ctggaggagt 121 ggaaatgcct ggacctcgct cagcagaatt tgtacaggga tgtgatgttg gagaactaca 181 gaaacttgtt ctccgttggt ctcactgtct gtaagccagg cctgatcacc tgcctggagc 241 aacgaaaaga gccctggaat gtgaagagac aggaggcagc agacggacat ccagctatgt 301 cttctcattt tacccaagac cttctgccag agcagggcat acaagatgca ttcccaaaaa 361 gaatactgag aggatatgga aattgtggcc ttgataattt atatttaagg aaagactggg 421 aaagtttaga tgagtgtaag ttgcaaaaag attataatgg acttaaccaa tgttcatcaa 481 ctacccatag caaaatcttt caatataata aatatgttaa aatctttgat aacttttcaa 541 atttacatag acgtaatata agtaatactg gagagaaacc tttcaaatgt caagaatgtg 601 gcaaatcctt tcaaatgctc tcattcctaa ctgaacatca gaaaattcac actggaaaaa 661 aattccaaaa atgtggagaa tgtggcaaaa cctttatcca gtgctcacac tttactgaac 721 ctgagaacat tgacactgga gagaaacctt acaagtgtca agaatgtaac aacgtcatta 781 aaacttgctc agtccttact aaaaatagaa tttatgccgg aggggaacat tacagatgtg 841 aagaatttgg caaagtattt aaccagtgct cccaccttac tgaacatgag catggtactg 901 aggaaaaacc ctgcaaatat gaagagtgca gcagtgtctt tatctcttgc tcaagccttt 961 ctaatcaaca gatgattctt gctggagaga agctctccaa atgtgaaaca tggtacaaag 1021 gttttaacca cagcccaaat ccttccaaac accagagaaa tgagattgga gggaaacctt 1081 tcaaatgtga ggaatgtgac agcatcttca agtggttctc agaccttact aaacataaga 1141 gaattcacac tggtgagaaa ccatacaaat gtgacgaatg tgggaaagcc tatacacagt 1201 cctcacacct cagtgaacac aggaggattc acaccggaga gaaaccctac caatgtgaag 1261 aatgtgggaa ggtcttcaga acttgctcaa gcctttctaa ccataagaga actcattctg 1321 aagaaaaacc ctacacgtgt gaagaatgtg gcaacatctt taagcagtta tcagacctca 1381 ctaagcataa gaaaacccat actggagaga agccctacaa atgtgacgaa tgtggaaaaa 1441 actttaccca gtcctccaac cttattgtac ataagagaat tcatactgga gagaaaccct 1501 acaagtgtga agaatgtggc agagtcttca tgtggttctc agacattacc aaacataaga 1561 aaacccatac tggagagaaa ccctacaaat gtgacgaatg tggaaaaaac tttacccagt 1621 cctcaaacct tattgtacat aagagaattc atactggaga gaaaccctac aagtgtgaaa 1681 agtgtggcaa agccttcacc cagttctcac acctgactgt acatgaaagc attcatactt 1741 nnccaacttt cttgtacaaa gttggcatta taagaaagca ttgcttatca atttgttgca 1801 acgaac