Construct: ORF ccsbBroadEn_15644
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011320.1_s300c1, BRDN0000390238
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCEL (8796)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8796 | SCEL | sciellin | XM_011535291.1 | 47.7% | 47.5% | (many diffs) |
| 2 | human | 8796 | SCEL | sciellin | XM_017020805.1 | 44.9% | 44.7% | (many diffs) |
| 3 | human | 8796 | SCEL | sciellin | XM_011535290.1 | 44.8% | 44.6% | (many diffs) |
| 4 | human | 8796 | SCEL | sciellin | XM_005266578.1 | 42.4% | 42.2% | (many diffs) |
| 5 | human | 8796 | SCEL | sciellin | XM_011535287.1 | 42.2% | 42.1% | (many diffs) |
| 6 | human | 8796 | SCEL | sciellin | NM_003843.4 | 42.2% | 42.2% | (many diffs) |
| 7 | human | 8796 | SCEL | sciellin | XM_011535286.1 | 42.2% | 42% | (many diffs) |
| 8 | human | 8796 | SCEL | sciellin | XM_011535284.1 | 41.1% | 40.9% | (many diffs) |
| 9 | human | 8796 | SCEL | sciellin | XM_011535285.2 | 41% | 39.8% | (many diffs) |
| 10 | human | 8796 | SCEL | sciellin | XM_011535281.1 | 41% | 40.9% | (many diffs) |
| 11 | human | 8796 | SCEL | sciellin | XM_011535282.1 | 41% | 40.9% | (many diffs) |
| 12 | human | 8796 | SCEL | sciellin | XM_011535283.1 | 41% | 40.9% | (many diffs) |
| 13 | human | 8796 | SCEL | sciellin | NM_144777.3 | 40.9% | 40.8% | (many diffs) |
| 14 | human | 8796 | SCEL | sciellin | XM_011535288.1 | 40.4% | 40.3% | (many diffs) |
| 15 | human | 8796 | SCEL | sciellin | XM_011535289.1 | 39.3% | 39.4% | (many diffs) |
| 16 | human | 8796 | SCEL | sciellin | XM_006719885.1 | 39.2% | 39.3% | (many diffs) |
| 17 | human | 8796 | SCEL | sciellin | NM_001160706.1 | 38.9% | 38.7% | (many diffs) |
| 18 | human | 8796 | SCEL | sciellin | XM_006719882.1 | 38.1% | 38.5% | (many diffs) |
| 19 | human | 8796 | SCEL | sciellin | XM_006719884.1 | 37.8% | 37.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 915
- ORF length:
- 849
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgtc caatgttacc ttgagaaaaa tgtctcccac aggaaatgag atgaagagca 121 ccactcaggg aaccacacgg aagcagcagg attttcacga ggtgaacaaa agaagaactt 181 tcttacagga taacagttgg ataaagaaac gccctgaaga agaaaaagat gaaaattacg 241 gtagggtggt gctcaaccga cataattccc atgatgcatt ggacaggaaa gtaaatgaga 301 gagatgtgcc aaaagctaca attagtcggt acagttctga tgacactttg gacaggagca 361 tgtccatgtt tagatcactg gaagtaacaa agttgcaacc tggcggttca ttgaatgcca 421 acacctccaa caccatagca tccacttctg ctactactcc tgtaaagaag aagaggcagt 481 cctggtttcc accgccccct ccaggttaca atgcctcttc gagcacagga accaggagac 541 gggaaccagg tgttcaccct ccaatacctc caaagcccag ttctcctgtt tcttctccta 601 accagctgag acaggataat aggcagatac atccacctaa accaggtgta tatacagaaa 661 ccaacagatc tgctgaaaga aatataagtg aagaattgga taatctcatc aaaatgaaca 721 aaagcttgaa taggaatcaa ggtcttgata gtctcttcag agcaaatcca aaggtagaag 781 aaagagagaa aaaagccaaa agccttgaaa gtctcatcta tatgagtacc cggacagata 841 aagatggcaa aggaatccaa agccttggaa gtccgattaa agttaatcaa aggactgaca 901 aaaatgagaa agggtnncca actttcttgt acaaagttgg cattataaga aagcattgct 961 tatcaatttg ttgcaacgaa c