Construct: ORF ccsbBroadEn_15709
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008798.1_s300c1, BRDN0000385151
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BTN2A2 (10385)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_001197238.2 | 100% | 100% | |
| 2 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_006714955.3 | 94.3% | 91.8% | (many diffs) |
| 3 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_017010168.2 | 94.3% | 91.8% | (many diffs) |
| 4 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_017010169.1 | 94.3% | 91.8% | (many diffs) |
| 5 | human | 11120 | BTN2A1 | butyrophilin subfamily 2 me... | NM_001197234.3 | 78.5% | 72.3% | (many diffs) |
| 6 | human | 11120 | BTN2A1 | butyrophilin subfamily 2 me... | NM_078476.4 | 78% | 72.3% | (many diffs) |
| 7 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_001197240.2 | 67.8% | 67.1% | (many diffs) |
| 8 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_001197237.2 | 63% | 62.8% | (many diffs) |
| 9 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_006995.5 | 63% | 62.8% | (many diffs) |
| 10 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_005248797.3 | 63% | 62.8% | (many diffs) |
| 11 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_006714953.4 | 63% | 62.8% | (many diffs) |
| 12 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_011514228.2 | 63% | 62.8% | (many diffs) |
| 13 | human | 11120 | BTN2A1 | butyrophilin subfamily 2 me... | NM_007049.5 | 51.6% | 47.6% | (many diffs) |
| 14 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_011514229.2 | 51.2% | 51% | (many diffs) |
| 15 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_017010166.2 | 51.2% | 51% | (many diffs) |
| 16 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_024446302.1 | 51.2% | 51% | (many diffs) |
| 17 | human | 11120 | BTN2A1 | butyrophilin subfamily 2 me... | NM_001197233.2 | 41.2% | 37.5% | (many diffs) |
| 18 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_181531.3 | 40.9% | 40.7% | (many diffs) |
| 19 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_005248798.4 | 40.9% | 40.7% | (many diffs) |
| 20 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_017010167.1 | 40.9% | 40.7% | (many diffs) |
| 21 | human | 54718 | BTN2A3P | butyrophilin subfamily 2 me... | NR_027795.1 | 33% | (many diffs) | |
| 22 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | NM_001197239.2 | 23.1% | 22.8% | (many diffs) |
| 23 | human | 10385 | BTN2A2 | butyrophilin subfamily 2 me... | XM_011514231.3 | 23.1% | 22.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1074
- ORF length:
- 1008
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga accagctgct gctctgcact tctccctgcc agcctccctc ctcctcctcc 121 tgctcctcct ccttctcagc ctgtgtgcac tggtctcagc ccagtttact gtcgtggggc 181 cagctaatcc catcctggcc atggtgggag aaaacactac attacgctgc catctgtcac 241 ccgagaaaaa tgctgaggac atggaggtgc ggtggttccg gtctcagttc tcccccgcag 301 tgtttgtgta taagggtggg agagagagaa cagaggagca gatggaggag taccggggaa 361 gaatcacctt tgtgagcaaa gacatcaaca ggggcagcgt ggccctggtc atacataacg 421 tcacagccca ggagaatggg atctaccgct gttacttcca agaaggcagg tcctacgatg 481 aggccatcct acgcctcgtg gtggcaggcc ttgggtctaa gcccctcatt gaaatcaagg 541 cccaagagga tgggagcatc tggctggagt gcatatctgg agggtggtac ccagagcccc 601 tcacagtgtg gagggacccc tacggtgagg ttgtgcccgc cctgaaggag gtttccatcg 661 ctgatgctga cggcctcttc atggtcacca cagctgtgat catcagagac aagtatgtga 721 ggaatgtgtc ctgctctgtc aacaacaccc tgctcggcca ggagaaggaa actgtcattt 781 ttattccaga atcctttatg cccagcgcat ctccctggat ggtggcccta gctgtcatcc 841 tgaccgcatc tccctggatg gtgtccatga ctgtcatcct ggctgttttc atcatcttca 901 tggctgtcag catctgttgc atcaagaaac ttcaaaggga aaaaaagatt ctgtcagggg 961 aaaagaaagt tgaacaagag gaaaaagaaa ttgcacagca acttcaagaa gaattgcgat 1021 ggagaagaac attcttacat gctgatgtca acctgactgg attaaggaat acctnnccaa 1081 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac