Construct: ORF ccsbBroadEn_15749
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001066.1_s300c1, BRDN0000386483
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UHRF1BP1L (23074)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | NM_001006947.2 | 99.9% | 99.8% | 848C>T |
| 2 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019049.1 | 44.8% | 44.4% | (many diffs) |
| 3 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019047.1 | 36% | 35.6% | (many diffs) |
| 4 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | NM_015054.2 | 35.5% | 35.1% | (many diffs) |
| 5 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_005268738.3 | 32.2% | 31.8% | (many diffs) |
| 6 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_005268739.4 | 31.3% | 31% | (many diffs) |
| 7 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XR_001748630.1 | 29.9% | (many diffs) | |
| 8 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019048.2 | 28% | 27.7% | (many diffs) |
| 9 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_006514265.1 | 36.9% | 39.2% | (many diffs) |
| 10 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_017314128.1 | 31.5% | 33.6% | (many diffs) |
| 11 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | NM_029166.2 | 31.4% | 33.4% | (many diffs) |
| 12 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XR_380453.1 | 29.9% | (many diffs) | |
| 13 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_006514264.2 | 28.6% | 30.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1632
- ORF length:
- 1566
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc cgggatcatc aagaaacaaa tcttgaagca cctctccaga tttaccaaaa 121 atttatctcc tgacaagata aatctaagta cccttaaagg agaaggtgaa ctgaagaatt 181 tggagttgga tgaagaagta ctccagaata tgttggattt gccaacatgg cttgctatca 241 acaaagtttt ttgtaataaa gcgtccatta ggatcccatg gacaaaactg aaaacacatc 301 ccatctgttt gtccctggat aaagtaataa tggaaatgag tacatgtgaa gaaccaagaa 361 gccctaatgg cccatcacca attgcaactg cttcaggaca aagtgaatac ggctttgctg 421 aaaaagtagt tgagggaatt tctgtttctg taaattctat agtcatcaga attggagcaa 481 aagccttcaa tgcatcattt gaactttctc agcttcggat ctatagtgta aatgcacact 541 gggaacatgg agatttgaga tttactcgta ttcaggatcc acagagagga gaggttttga 601 cttttaaaga aataaattgg cagatgataa gaatagaggc agatgccacc caaagttcac 661 atcttgaaat tatgtgtgct cctgttcgat taataaccaa ccaatcaaaa atcagagtca 721 cacttaaaag aaggttaaag gactgcaatg tcatagcaac aaagttagtt ctaatattgg 781 atgacttatt atgggttttg actgattccc agttgaaagc tatggtacaa tatgcaaagt 841 ctcttagtga agcaatagaa aaatcaacag aacaaaggaa gagtatggct cctgaaccta 901 cacagagctc tatagtagtc gcatctgccc agcaagtgaa gacaacgcaa acttcaaatg 961 ctcctgatgt aaatgatgca attgtgaaac tattcaatga ttttgatgtt aaggaaacct 1021 cccatcattt agtgatttct catctagatc tacacatatg tgatgacatt catgctaaag 1081 aaaaagagtc aaacagacgt attactggag gggcaatgca actctctttt acacagctaa 1141 ctatagatta ttatccttat cataaagcag gagatagttg taatcattgg atgtatttta 1201 gtgatgcaac caaaacaaaa aatggatggg ccaatgagtt attgcatgaa tttgagtgca 1261 acgttgaaat gcttaaacag gctgtgaagg atcataatgt aggttcacct cctaaatccc 1321 caacacatgc ctctccccag cacacacaaa cagagaagga ctaccctctg aaagggacat 1381 gcagaacacc ttcagtatta tctcaacaat caaaagctaa gctaatgtct agttctgttg 1441 tggttagact tgcagatttc aatatatacc aggtctctac agcggaacaa tgtcgttctt 1501 cccccaaaag catgatttgc tgcaataaaa aatccctata tcttccacaa gaaatgtcag 1561 ctgtctatat agaattcaca gaatattact atccagatgg aaaggatttt ccaactgcct 1621 tcctaagcag atnnccaact ttcttgtaca aagttggcat tataagaaag cattgcttat 1681 caatttgttg caacgaac