Construct: ORF ccsbBroadEn_15797
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006469.1_s300c1, BRDN0000384920
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EML4 (27436)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27436 | EML4 | EMAP like 4 | XR_001738709.1 | 3.3% | 1_5018del;5205_5473del | |
| 2 | human | 27436 | EML4 | EMAP like 4 | XR_001738708.1 | 3.3% | 1_5051del;5238_5506del | |
| 3 | human | 27436 | EML4 | EMAP like 4 | XR_001738710.1 | 3.3% | 1_5142del;5329_5597del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 252
- ORF length:
- 186
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgtg ctatactccc tgcaagaaat atactgacat gaacaggcag ttcttggaga 121 agaaagagca tttctttaag tacctgggga atacagctct cagtgatcag cagggagttt 181 atttgaggac atcagtcacc tttggggttg ccatgtacaa tgagatttat aatcatgata 241 ctcttcggtg gtnnccaact ttcttgtaca aagttggcat tataagaaag cattgcttat 301 caatttgttg caacgaac