Construct: ORF ccsbBroadEn_15833
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012005.1_s300c1, BRDN0000397262
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DRICH1 (51233)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51233 | DRICH1 | aspartate rich 1 | XM_017028813.1 | 47.6% | 32.2% | (many diffs) |
| 2 | human | 51233 | DRICH1 | aspartate rich 1 | NM_016449.4 | 45.6% | 30.9% | (many diffs) |
| 3 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530209.2 | 38.5% | 25.4% | (many diffs) |
| 4 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530208.2 | 32.6% | 22.7% | (many diffs) |
| 5 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530206.1 | 31.8% | 22% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 426
- ORF length:
- 360
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggg gaatatactg acctgttgta tcaactccca ctgtggctgg cccaggggga 121 aggacgcacc ctgttatgaa tctgatactg atatttatga gactgtggct gctgcaacat 181 cagaatccac tactgtagag cctggcaagc tggatgtggg agccacggag ggccaagacc 241 tgcagcacat cagcaaccaa aagatgccca caggtaaaaa agccacgggt gccgtttacc 301 ctctggcaca cctctggcca cccccacccc cttcccttac cctcatcccc agagacatcc 361 tcagcttcca gctccctcct gcccatagcc agctttccca ggtctggggc atgggggaca 421 aaggctnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt 481 gttgcaacga ac