Construct: ORF ccsbBroadEn_15891

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004502.1_s300c1, BRDN0000391506
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCMTD2 (55251)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55251 PCMTD2 protein-L-isoaspartate (D-a... NM_018257.3 72.2% 69.5% 1_164del;203_338del
2 human 55251 PCMTD2 protein-L-isoaspartate (D-a... NM_001104925.1 64.8% 62% 1_164del;203_338del;580_581ins81
3 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... XM_006500626.3 33.7% 32.9% (many diffs)
4 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... XM_006500627.3 33.4% 32.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
852
ORF length:
783
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat ggaagcatgg aaacattcac ctctcagccc cgtgcatcac tcagatgtga
121tagagtatgc aaagcagaaa ctggacttct tcatcagaac aagtgatagt tttgacaagt
181ttgacttctg tgaaccttcc tttgttactg ggaattgcct ggagatttct ccggattgtt
241ctcagtatga tcgtgtatac tgtggggctg gcgtgcagaa agagcatgaa gagtacatga
301agaatcttct caaagtggga gggatccttg tcatgccact ggaagagaag ttgactaaga
361taacacgcac aggtccttca gcttgggaaa ccaaaaagat tcttgctgtt tcttttgctc
421ctctgatcca gccctgccat tcagagtcag gaaaatcaag acttgtccag ttaccaccag
481tggcagttcg cagcctccag gacttggctc gcatcgccat ccggggcacc attaaaaaga
541ttattcatca ggaaactgtg agcaaaaacg gaaacggact aaagaacacc cccaggttta
601aacgaaggag agttcgccgc cgtcgaatgg aaacgattgt ctttttggac aaagaagtct
661ttgccagtcg gatttccaac ccctcagatg acaacagctg tgaagacttg gaagaggaac
721ggagggaaga agaagagaag accccgccgg aaacaaagcc agacccccca gtgaacttcc
781tacgccagaa ggtcctgagc ctccctctgc cagatcccct gaaatactac ttgctttatt
841acagagaaaa atnnccaact ttcttgtaca aagttggcat tataagaaag cattgcttat
901caatttgttg caacgaac

Download FASTA (ORF) (Full)