Construct: ORF ccsbBroadEn_15985
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015881.1_s300c1, BRDN0000393428
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARSJ (79642)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008597.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 2 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008598.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 3 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008599.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 4 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008600.1 | 19.9% | 3% | 1_775del;1031_1281del |
| 5 | human | 79642 | ARSJ | arylsulfatase family member J | NM_001354211.2 | 17.7% | 1.2% | 1_943del;1199_1440del |
| 6 | human | 79642 | ARSJ | arylsulfatase family member J | XM_011532239.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 7 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008593.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 8 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008594.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 9 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008595.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 10 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454216.1 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 11 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454215.1 | 17.3% | 3.6% | 1_970del;1226_1467del |
| 12 | human | 79642 | ARSJ | arylsulfatase family member J | XM_011532238.3 | 17.2% | 3.6% | 1_970del;1226_1476del |
| 13 | human | 79642 | ARSJ | arylsulfatase family member J | NM_001354210.2 | 14.2% | 3% | 1_1291del;1547_1788del |
| 14 | human | 79642 | ARSJ | arylsulfatase family member J | NM_024590.4 | 14.1% | 3% | 1_1291del;1547_1797del |
| 15 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008592.2 | 14.1% | 3% | 1_1291del;1547_1797del |
| 16 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454214.1 | 14.1% | 3% | 1_1291del;1547_1797del |
| 17 | mouse | 271970 | Arsj | arylsulfatase J | NM_173451.3 | 12.8% | 3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 321
- ORF length:
- 255
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc tcctgggcag caggctatgg gatctggaac actgcaatcc agtcagccat 121 cagagtgcag cactggaaat tgcttacagg aaatcctggc tacagcgact gggtcccccc 181 tcagtctttc agcaacctgg gaccgaaccg gtggcacaat gaacggatca ccttgtcaac 241 tggcaaaagt gtatggcttt tcaacatcac agccgaccca tatgagaggg tggacctatc 301 taacaggtat ccaggaatcg tnnccaactt tcttgtacaa agttggcatt ataagaaagc 361 attgcttatc aatttgttgc aacgaac