Construct: ORF ccsbBroadEn_15999
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015000.1_s300c1, BRDN0000398587
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFP2 (80108)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80108 | ZFP2 | ZFP2 zinc finger protein | NM_030613.4 | 99.8% | 100% | 636A>G;822A>G |
| 2 | mouse | 22678 | Zfp2 | zinc finger protein 2 | NM_001044697.2 | 84% | 85.4% | (many diffs) |
| 3 | mouse | 22678 | Zfp2 | zinc finger protein 2 | NM_001044698.2 | 84% | 85.4% | (many diffs) |
| 4 | mouse | 22678 | Zfp2 | zinc finger protein 2 | NM_001044700.2 | 84% | 85.4% | (many diffs) |
| 5 | mouse | 22678 | Zfp2 | zinc finger protein 2 | NM_001294323.1 | 84% | 85.4% | (many diffs) |
| 6 | mouse | 22678 | Zfp2 | zinc finger protein 2 | NM_178447.3 | 84% | 85.4% | (many diffs) |
| 7 | mouse | 22678 | Zfp2 | zinc finger protein 2 | XM_017314506.1 | 84% | 85.4% | (many diffs) |
| 8 | mouse | 22678 | Zfp2 | zinc finger protein 2 | XM_017314507.1 | 78.1% | 79.4% | (many diffs) |
| 9 | mouse | 22678 | Zfp2 | zinc finger protein 2 | XM_017314508.1 | 78.1% | 79.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1452
- ORF length:
- 1383
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggaaagggaa ggtatctggc attctactct aggggaaacc tgggaaccta 121 ataattggtt agagggacaa caggatagtc atctgagcca agtgggagtt acccataagg 181 aaaccttcac tgagatgaga gtatgtggag gtaatgaatt tgaaagatgt tccagtcagg 241 attcaatcct tgatacacag caaagcattc ctatggtaaa aaggccccat aactgtaatt 301 cacatggaga agatgccaca caaaattctg agttaattaa aactcaaaga atgtttgtag 361 gaaagaagat ctatgaatgt aatcagtgca gcaaaacctt cagtcagagc tcatcccttc 421 ttaagcacca gaggattcat actggggaga aaccctataa gtgtaatgta tgtgggaaac 481 acttcattga acgatcctcc cttactgtac atcaaagaat tcatactgga gagaaaccct 541 ataaatgtaa tgaatgtggg aaagccttta gtcagagcat gaatcttact gtccatcaac 601 gaactcacac cggagagaaa ccctatcagt gtaaagagtg tggcaaagcc ttccataaga 661 attcatctct tattcagcat gaaaggattc atactggaga gaagccctac aaatgtaatg 721 aatgtggtaa agcttttacc caaagcatga atttgacagt tcatcagaga actcatacag 781 gagaaaaacc ctatgaatgt aatgaatgtg gaaaagcctt cagtcaaagc atgcatctta 841 ttgtacatca gagaagccat actggagaaa aaccctatga gtgtagtcag tgtggaaaag 901 cctttagtaa gagctcaact cttaccctac atcagcgaaa tcacactgga gaaaaacctt 961 acaaatgtaa caaatgcggg aaatccttta gccaaagtac atatcttata gaacatcaga 1021 gacttcattc tggagtaaaa ccttttgaat gtaacgagtg tggaaaagct ttcagtaaga 1081 attcatctct aactcaacat cggagaattc acactggaga gaaaccttat gagtgtatgg 1141 tgtgtggaaa acatttcact ggacgatcat cccttaccgt gcatcaggtc attcacactg 1201 gagagaaacc ttatgagtgc aatgaatgtg gaaaggcatt cagccagagt gcttacctta 1261 ttgaacatca aagaattcat actggtgaga aaccctatga atgtgatcag tgtggaaaag 1321 ccttcattaa gaattcatcc cttacagtgc atcagagaac tcatacagga gagaaaccct 1381 atcagtgtaa tgaatgcgga aaagccttca gccggagtac aaaccttaca cgacatcaaa 1441 gaactcatac gtnnccaact ttcttgtaca aagttggcat tataagaaag cattgcttat 1501 caatttgttg caacgaac