Construct: ORF ccsbBroadEn_16005
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000680.1_s300c1, BRDN0000395199
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITIH5 (80760)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80760 | ITIH5 | inter-alpha-trypsin inhibit... | NM_001001851.2 | 100% | 100% | |
| 2 | human | 80760 | ITIH5 | inter-alpha-trypsin inhibit... | XM_011519714.3 | 96.5% | 96.5% | 937_1011del |
| 3 | human | 80760 | ITIH5 | inter-alpha-trypsin inhibit... | NM_030569.7 | 73.9% | 72% | (many diffs) |
| 4 | human | 80760 | ITIH5 | inter-alpha-trypsin inhibit... | XM_011519713.3 | 72% | 70.1% | (many diffs) |
| 5 | human | 80760 | ITIH5 | inter-alpha-trypsin inhibit... | NM_032817.6 | 51% | 49% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2175
- ORF length:
- 2106
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gctcctgctg ctggggctgt gcctggggct gtccctgtgt gtggggtcgc 121 aggaagaggc gcagagctgg ggccactctt cggagcagga tggactcagg gtcccgaggc 181 aagtcagact gttgcagagg ctgaaaacca aacctttgat gacagaattc tcagtgaagt 241 ctaccatcat ttcccgttat gccttcacta cggtttcctg cagaatgctg aacagagctt 301 ctgaagacca ggacattgag ttccagatgc agattccagc tgcagctttc atcaccaact 361 tcactatgct tattggagac aaggtgtatc agggcgaaat tacagagaga gaaaagaaga 421 gtggtgatag ggtaaaagag aaaaggaata aaaccacaga agaaaatgga gagaagggga 481 ctgaaatatt cagagcttct gcagtgattc ccagcaagga caaagccgcc tttttcctga 541 gttatgagga gcttctgcag aggcgcctgg gcaagtacga gcacagcatc agcgtgcggc 601 cccagcagct gtccgggagg ctgagcgtgg acgtgaatat cctggagagc gcgggcatcg 661 catccctgga ggtgctgccg cttcacaaca gcaggcagag gggcagtggg cgcggggaag 721 atgattctgg gcctccccca tctactgtca ttaaccaaaa tgaaacattt gccaacataa 781 tttttaaacc tactgtagta caacaagcca ggattgccca gaatggaatt ttgggagact 841 ttatcattag atatgacgtc aatagagaac agagcattgg ggacatccag gttctaaatg 901 gctattttgt gcactacttt gctcctaaag accttcctcc tttacccaag aatgtggtat 961 tcgtgcttga cagcagtgct tctatggtgg gaaccaaact ccggcagacc aaggatgccc 1021 tcttcacaat tctccatgac ctccgacccc aggaccgttt cagtatcatt ggattttcca 1081 accggatcaa agtatggaag gaccacttga tatcagtcac tccagacagc atcagggatg 1141 ggaaagtgta cattcaccat atgtcaccca ctggaggcac agacatcaac ggggccctgc 1201 agagggccat caggctcctc aacaagtacg tggcccacag tggcattgga gaccggagcg 1261 tgtccctcat cgtcttcctg acggatggga agcccacggt cggggagacg cacaccctca 1321 agatcctcaa caacacccga gaggccgccc gaggccaagt ctgcatcttc accattggca 1381 tcggcaacga cgtggacttc aggctgctgg agaaactgtc gctggagaac tgtggcctca 1441 cacggcgcgt gcacgaggag gaggacgcag gctcgcagct catcgggttc tacgatgaaa 1501 tcaggacccc gctcctctct gacatccgca tcgattatcc ccccagctca gtggtgcagg 1561 ccaccaagac cctgttcccc aactacttca acggctcgga gatcatcatt gcggggaagc 1621 tggtggacag gaagctggat cacctgcacg tggaggtcac cgccagcaac agtaagaaat 1681 tcatcatcct gaagacagat gtgcctgtgc ggcctcagaa ggcagggaaa gatgtcacag 1741 gaagccccag gcctggaggc gatggagagg gggacaccaa ccacatcgag cgtctctgga 1801 gctacctcac cacaaaggag ctgctgagct cctggctgca aagtgacgat gaaccggaga 1861 aggagcggct gcggcagcgg gcccaggccc tggctgtgag ctaccgcttc ctcactccct 1921 tcacctccat gaagctgagg gggccggtcc cacgcatgga tggcctggag gaggcccacg 1981 gcatgtcggc tgccatggga cccgaaccgg tggtgcagag cgtgcgagga gctggcacgc 2041 agccaggacc tttgctcaag aagccatacc agccaagaat taaaatctct aaaacatcag 2101 ttcgtggctt cagaagggaa gaacagattt tttcaaatgt catgaaattt ccttttgcca 2161 gcatcctgga actattgcca actttcttgt acaaagttgg cattataaga aagcattgct 2221 tatcaatttg ttgcaacgaa c