Construct: ORF ccsbBroadEn_16078
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012157.1_s300c1, BRDN0000390880
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OSBPL5 (114879)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114879 | OSBPL5 | oxysterol binding protein l... | NM_001144063.2 | 100% | 100% | |
| 2 | human | 114879 | OSBPL5 | oxysterol binding protein l... | NM_145638.3 | 100% | 100% | |
| 3 | human | 114879 | OSBPL5 | oxysterol binding protein l... | NM_020896.4 | 92.2% | 92.2% | 398_601del |
| 4 | human | 114879 | OSBPL5 | oxysterol binding protein l... | XM_011519873.3 | 92.2% | 92.2% | 398_601del |
| 5 | human | 114879 | OSBPL5 | oxysterol binding protein l... | XM_017017163.2 | 92.2% | 92.2% | 398_601del |
| 6 | human | 114879 | OSBPL5 | oxysterol binding protein l... | XM_017017164.1 | 62.7% | 62.7% | 0_1ins906 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2499
- ORF length:
- 2433
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgaa ggaggaggcc ttcctccggc gccgcttctc cctgtgtcca ccttcctcca 121 cccctcagaa agtcgacccc cggaagctca cccggaactt gctcctcagc ggagacaatg 181 agctctaccc actcagccca gggaaggaca tggagcccaa cggcccgtcg ctgcccaggg 241 atgaagggcc cccgacccca agctctgcca cgaaggtgcc accggcagag tacaggctgt 301 gcaacgggtc agacaaggaa tgtgtgtccc ccaccgccag ggtcaccaag aaggagactc 361 tcaaggcgca gaaggagaac taccggcagg agaagaagcg cgccacacgg cagctgctca 421 gcgctctgac agaccccagc gtggtcatca tggctgacag cctgaagggc cccaaaggtg 481 agagcgtggg ctccatcaca cagcccctgc ccagcagcta cctgatcttc agggccgcct 541 ccgagtcaga tggtcgctgc tggctggacg ccctggagct ggccctgcgc tgctctagcc 601 tactgagact gggcacctgc aagccgggcc gagacgggga gccagggacc tcgccagacg 661 catcaccctc atcgctctgt gggctgccag cctcagccac cgtccaccca gaccaagacc 721 tgttcccact gaacgggtct tccctggaga acgatgcatt ctcagacaag tcggagagag 781 agaaccctga ggagtcagat accgagaccc aggaccatag ccggaagacg gagagtggca 841 gcgaccagtc agagacccct ggggccccgg tgcggagagg gaccacctat gtggagcagg 901 tccaggagga gctgggggag ctgggcgagg cgtcccaggt ggagacagtg tcagaggaga 961 acaagagtct gatgtggacc ctgctgaagc agctacggcc aggcatggac ctgtcccgcg 1021 tggtgctacc cacgttcgta ctggagccgc gctccttcct gaacaagctc tccgactact 1081 actaccacgc agacctgctc tccagggctg cggtggagga ggatgcctac agccgcatga 1141 agctggtgct gcggtggtac ctgtctggct tctacaagaa gcccaaggga atcaagaagc 1201 cgtacaaccc catcctgggg gagaccttcc gctgctgctg gttccacccg cagactgaca 1261 gccgcacatt ctacatagca gagcaggtgt cccaccaccc gcccgtgtct gccttccacg 1321 tcagcaaccg gaaggacggc ttctgcatca gtggcagcat cacagccaag tccaggtttt 1381 atgggaactc gctgtcggcg ctgctggacg gcaaagccac gctcaccttc ctgaaccgag 1441 ccgaggatta cacccttacc atgccctacg cccactgcaa aggaatcctg tatggcacga 1501 tgaccctgga gctgggtggg aaggtcacca tcgagtgtgc gaagaacaac ttccaggccc 1561 agctggaatt caaactcaag cccttcttcg ggggtagcac cagcatcaac cagatctcgg 1621 gaaagatcac gtcgggagag gaagtcctgg cgagcctcag tggccactgg gacagggacg 1681 tgtttatcaa ggaggaaggg agcggaagca gtgcgctttt ctggaccccg agcggggagg 1741 tccgcagaca gaggctgagg cagcacacgg tgccgctgga ggagcagacg gagctggagt 1801 ccgagaggct ctggcagcac gtcaccaggg ccatcagcaa gggcgaccag cacagggcca 1861 cacaggagaa gtttgcactg gaggaggcac agcggcagcg ggcccgtgag cggcaggaga 1921 gcctcatgcc ctggaagccg cagctgttcc acctggaccc catcacccag gagtggcact 1981 accgatacga ggaccacagc ccctgggacc ccctgaagga catcgcccag tttgagcaag 2041 acgggatcct gcggaccttg cagcaggagg ccgtggcccg ccagaccacc ttcctgggca 2101 gcccagggcc caggcacgag aggtctggcc cagaccagcg gcttcgcaag gccagcgacc 2161 agccctccgg ccacagccag gccacggaga gcagcggatc cacgcctgag tcctgcccag 2221 agctctcaga cgaggagcag gatggtgact ttgtccctgg cggtgagagc ccatgccctc 2281 ggtgcaggaa ggaggcgcgg cggctgcagg ccctgcacga ggccatcctc tccatccgag 2341 aggcccagca ggagctgcac aggcacctct cggccatgct gagctccacg gcacgggcag 2401 cacaggcacc gaccccaggc ctcctgcaga gcccccgatc ctggttcctg ctctgcgtgt 2461 tcctggcgtg tcagctgttc attaaccaca tcctcaaatn nccaactttc ttgtacaaag 2521 ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac