Construct: ORF ccsbBroadEn_16094
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005102.1_s300c1, BRDN0000390830
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC26 (137196)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130918.1 | 21.8% | 1_200del;528_1495del | |
| 2 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130919.1 | 19.8% | 1_354del;682_1649del | |
| 3 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130920.1 | 19.6% | 1_371del;699_1666del | |
| 4 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130917.1 | 19% | 1_423del;751_1718del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 393
- ORF length:
- 327
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga aagattgtgc ctgcagcctg gcctgttgcc cacagcggtc tacctgccac 121 actgggaaag atcgagcaga gacagagaag aaaaggaggc tccatttttc aggctgctct 181 cccgcaggct catgttttgt gttcatgcca ggcagagaac acaaaatgtt ccaataaata 241 agtatcaaag gttagtggtg aaaatgaagg aggaggaggc attgcgtgaa aaactaaaca 301 tgcaaaatat tacacacaaa gagaaccaaa atgcaggttc actggaaatg atagacaata 361 tgttaaaaca agaggagaga agagagctga aatnnccaac tttcttgtac aaagttggca 421 ttataagaaa gcattgctta tcaatttgtt gcaacgaac