Construct: ORF ccsbBroadEn_16104
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004347.1_s300c1, BRDN0000395028
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM98C (147965)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147965 | FAM98C | family with sequence simila... | NM_174905.3 | 51.2% | 40.4% | 1_456del;853_883del;1047_1048ins46 |
| 2 | human | 147965 | FAM98C | family with sequence simila... | XR_935748.2 | 44.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggt ccaagaactg gaccttaccc tccaagccct ggggctgccc agacctgcac 121 cagggacccc cgccagccag ctgctgcagg agttgcatgc taagatctca gagctgcagc 181 cttctctgcc cccagggtcc ctgcagcccc tcctcagctg ctcgctagat gcacccagat 241 gggaagcgtt ggagtctctg tcccaaagcc tcagagatca gtaccgctgc cgccgctgcc 301 tcctcctcaa gcgccttgac ctcactacat ctgctttcca ctggagtgac cgggcagagg 361 cccaaggaga ggccatgagg gcagtgctga tcccaattcg agaggttctg accccagaat 421 cggacatctc cattgcacac gttctggctg cccgagccga cctgtccgca gagggacctg 481 ctgtgccatc aacaaggtgc ttatgggcaa cgttccagac cgggggggcc gcccaaatga 541 gctggagcct cccatgccca cctggaggag ccgaagagag gatggaggcc cccagtgttg 601 gggtcgcaag aagaagaaga agaagtaaag ggggactggt ggtcgggggc ggggggtcct 661 ccatgagatg ctacccaact ttcttgtaca aagttggcat tataagaaag cattgcttat 721 caatttgttg caacgaac