Construct: ORF ccsbBroadEn_16116

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011414.1_s300c1, BRDN0000392176
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNST (163882)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 163882 CNST consortin, connexin sorting... NM_001139459.1 41% 38% (many diffs)
2 human 163882 CNST consortin, connexin sorting... NM_152609.3 34.9% 32.3% (many diffs)
3 human 163882 CNST consortin, connexin sorting... XM_005273081.3 34.9% 32.3% (many diffs)
4 human 163882 CNST consortin, connexin sorting... XM_011544110.3 34.9% 32.3% (many diffs)
5 human 163882 CNST consortin, connexin sorting... XM_011544111.1 34.9% 32.3% (many diffs)
6 human 163882 CNST consortin, connexin sorting... XM_017000487.1 17.9% 15.1% (many diffs)
7 human 163882 CNST consortin, connexin sorting... XM_011544112.1 16.2% 13.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
855
ORF length:
789
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga tgacagcgat actcctacat attatctgca aatagaacca caagatggat
121gtcatcctgg tgacagcgtg gaaaggagtg tgacctgtct gccttctgca tcagatgaaa
181atgaaaatca gcttgacggg gacgggcatg agcatctgac cagcagtgac agtgcgatgg
241gaaagcccca agtgtctgag caggacagtc tcaataataa tgaaagctgc acattgagct
301gcgaggtggc tgcaggtgag aacttgcaaa acaccctttg tgaagcctcc agagatgaac
361aggccttctt gggaaaggac aaaaaaattc ctggaaaaag aagtccaaga agcaaaaaag
421ggactgctaa gaagatacca ccaggacttt tttcaggaga tattgcacct ttaatgcaag
481aaaaagtact aagcgcagtc acatatgctg ttgatgatga agaagctgct gaagtaaatg
541ctaatgagca gccagaggcg ccaaagcttg ttctgcagtc tctgttttca cttatacgag
601gtgaagttga gcagttggat tcaagagcac ttcccctttg ccttcatcag atagcagaat
661cctatttcca ggaggaggac tatgagaaag caatgaaatt cattcagcta gaacgattgt
721atcatgagca attgctcgca aatctttctg ccattcaaga acagtggggt aagtacagac
781caacatggaa tgtggaatta gcagtaatcc aacaagtcac tatctacaaa attaacatat
841ttgacctggt tttatnncca actttcttgt acaaagttgg cattataaga aagcattgct
901tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)