Construct: ORF ccsbBroadEn_16125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004945.1_s300c1, BRDN0000391015
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LVRN (206338)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 206338 | LVRN | laeverin | NM_173800.5 | 19.8% | 19.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 660
- ORF length:
- 594
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgaa ggtggaaaat ttcaaaacaa gtgaaataca ggaactcttt gacatattta 121 cttacagcaa gggagcgtct atggcccgga tgctttcttg tttcttgaat gagcatttat 181 ttgtcagtgc actcaagtca tatttgaaga cattttccta ctcaaacgct gagcaagatg 241 atctatggag gcattttcaa atggccatag atgaccagag tacagttatt ttgccagcaa 301 caataaaaaa cataatggac agttggacac accagagtgg ttttccagtg atcactttaa 361 atgtgtctac tggcgtcatg aaacaggagc cattttatct tgaaaacatt aaaaatcgga 421 ctcttctaac cagcaatgac acatggattg tccctattct ttggataaaa aatggaacta 481 cacaaccttt agtctggcta gatcaaagca gcaaagtatt cccagaaatg caagtttcag 541 attctgacca tgactgggtg attttgaatt tgaatatgac tggatattat agagttaatt 601 atgataaatt aggttggaag aaactaaatc aacaacttga aaaggatcct aagatgagat 661 nnccaacttt cttgtacaaa gttggcatta taagaaagca ttgcttatca atttgttgca 721 acgaac