Construct: ORF ccsbBroadEn_16133
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000672.1_s300c1, BRDN0000395264
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNPY4 (245812)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 245812 | CNPY4 | canopy FGF signaling regula... | NM_152755.2 | 99.1% | 99.1% | 656_661delAGGAGG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 807
- ORF length:
- 738
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gggacctgtg cggttgggaa tattgctttt cctttttttg gccgtgcacg 121 aggcttgggc tgggatgttg aaggaggagg acgatgacac agaacgcttg cccagcaaat 181 gcgaagtgtg taagctgctg agcacagagc tacaggcgga actgagtcgc accggtcgat 241 ctcgagaggt gctggagctg gggcaggtgc tggatacagg caagaggaag agacacgtgc 301 cttacagcgt ttcagagaca aggctggaag aggccttaga gaatttatgt gagcggatcc 361 tggactatag tgttcacgct gagcgcaagg gctcactgag atatgccaag ggtcagagtc 421 agaccatggc aacactgaaa ggcctagtgc agaagggggt gaaggtggat ctggggatcc 481 ctctggagct ttgggatgag cccagcgtgg aggtcacata cctcaagaag cagtgtgaga 541 ccatgttgga ggagtttgaa gacattgtgg gagactggta cttccaccat caggagcagc 601 ccctacaaaa ttttctctgt gaaggtcatg tgctcccagc tgctgaaact gcatgtctac 661 aggaaacttg gactggaaag gagatcacag atggggaaga gaaaacagaa ggggaggaag 721 agcaggagga ggaagaggag gaagaggaag ggggagacaa gatgaccaag acaggaagcc 781 accccaaact tgaccgagaa gatcttttgc caactttctt gtacaaagtt ggcattataa 841 gaaagcattg cttatcaatt tgttgcaacg aac