Construct: ORF ccsbBroadEn_16156
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010047.1_s300c1, BRDN0000395271
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPIHBP1 (338328)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338328 | GPIHBP1 | glycosylphosphatidylinosito... | NM_178172.6 | 99.6% | 99.4% | 41T>G;138G>T |
| 2 | human | 338328 | GPIHBP1 | glycosylphosphatidylinosito... | NM_001301772.2 | 67.5% | 67.3% | 41T>G;138G>T;375_376ins177 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 621
- ORF length:
- 552
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gaaggcgctc ggggctgtcc tgcttgccct cttgctgtgc gggcggccag 121 ggagagggca gacacagcag gaggaagagg aagaggacga ggaccacggg ccagatgact 181 acgacgagga agatgaggat gaggttgaag aggaggagac caacaggctc cctggtggca 241 ggagcagagt gctgctgcgg tgctacacct gcaagtccct gcccagggac gagcgctgca 301 acctgacgca gaactgctca catggccaga cctgcacaac cctcattgcc cacgggaaca 361 ccgagtcagg cctcctgacc acccactcca cgtggtgcac agacagctgc cagcccatca 421 ccaagacggt ggaggggacc caggtgacca tgacctgctg ccagtccagc ctgtgcaatg 481 tcccaccctg gcaaagctcc cgagtccagg acccaacagg caagggggca ggcggccccc 541 ggggcagctc cgaaactgtg ggcgcagccc tcctgctcaa cctccttgcc ggccttggag 601 caatgggggc caggagaccc ttgccaactt tcttgtacaa agttggcatt ataagaaagc 661 attgcttatc aatttgttgc aacgaac