Pool: CP0070 (sgRNA) - Green Monkey Genome 1-4
- Name:
- CP0070
- Type:
- S. pyogenes Cas9 CRISPRko
- Sub type:
- Single insert
- Taxon:
- Green Monkey
- Vectors:
- pXPR_050
- Distinct barcodes:
- 84963
- Addgene ID:
- 178284
File Downloads
The files in this table are provided to aid in the analysis of pooled screens. Be aware that these files may go for periods of time without change. However, each file is the most current edition available of its type, generated by a pipeline that runs periodically and assesses if changes are needed.
Refer to this guide for picking the appropriate chip file for your analysis.
Chip Files | |||||
Genome Annotation | Match | Description | Last Changed | Download | |
| |||||
Chlorocebus_sabeus_1.1 NCBI | strict[?]"strict" CHIP filesStrict CHIP files are generated using the most stringent criteria to determine whether a perturbagen sequence matches the reference target: Strict shRNA CHIP files:
Strict sgRNA CHIP files:
|
Nmer barcode to gene mapping via strict sgRNA sequence match to NCBI-annotated genes in Chlorocebus_sabeus_1.1. | 2022-12-01 | chip [preferred] | |
lax[?]"lax" CHIP filesLax CHIP files are generated using less stringent criteria to determine whether a perturbagen sequence matches the reference target: Lax shRNA CHIP files:
Lax sgRNA CHIP files:
|
Nmer barcode to gene mapping via lax sgRNA sequence match to NCBI-annotated genes in Chlorocebus_sabeus_1.1. | 2022-12-01 | chip | ||
(Original Target) | origtarget[?]The gene that this construct was originally designed to target | Nmer barcode to gene mapping using the construct's originally intended target gene, if known. | 2019-03-04 | chip | |
Other Files | |||||
File Type | Description | Last Changed | Download | ||
| |||||
Chlorocebus_sabeus_1.1 BED file | Track data in the UCSC BED format, with all perfect sgRNA target sequence (Nmer) matches at PAM sites in Chlorocebus_sabeus_1.1. | 2020-06-17 | bed | ||
Reference file | Associates all Nmer barcodes in the pool with their construct ID(s), if any. Used for sequence deconvolution, e.g., with PoolQ. | 2018-09-11 | ref |