Transcript: Human NM_001001802.2

Homo sapiens olfactory receptor family 2 subfamily A member 42 (OR2A42), mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
OR2A42 (402317)
Length:
933
CDS:
1..933

Additional Resources:

NCBI RefSeq record:
NM_001001802.2
NBCI Gene record:
OR2A42 (402317)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001001802.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000189119 GAGTTCCTCCTACTGGGATTT pLKO.1 28 CDS 100% 10.800 5.400 Y OR2A25 n/a
2 TRCN0000368553 GGATTCAGATGCTCCTCTTTG pLKO_005 62 CDS 100% 10.800 5.400 Y OR2A4 n/a
3 TRCN0000204261 CTCAACCAGGTGGTCATCTTT pLKO.1 577 CDS 100% 5.625 2.813 Y OR2A1 n/a
4 TRCN0000203514 CTTCTCCCTGTTCTATATCTT pLKO.1 87 CDS 100% 5.625 2.813 Y OR2A1 n/a
5 TRCN0000188066 CAGTGCCATCATCATGTACAT pLKO.1 756 CDS 100% 4.950 2.475 Y OR2A1 n/a
6 TRCN0000188482 CCCATGTGGTTCTCATCCTAA pLKO.1 470 CDS 100% 4.950 2.475 Y OR2A1 n/a
7 TRCN0000189296 CGCAGACCTTTCTCTGTTTGA pLKO.1 293 CDS 100% 4.950 2.475 Y OR2A42 n/a
8 TRCN0000204447 CTTCTTTGGCAGTGCCATCAT pLKO.1 747 CDS 100% 4.950 2.475 Y OR2A42 n/a
9 TRCN0000189113 GACGCAGACCTTTCTCTGTTT pLKO.1 291 CDS 100% 4.950 2.475 Y OR2A1 n/a
10 TRCN0000189222 GCAGTGCCATCATCATGTACA pLKO.1 755 CDS 100% 4.950 2.475 Y OR2A42 n/a
11 TRCN0000197319 GCTGATGTCCTACGATCGTTA pLKO.1 345 CDS 100% 4.950 2.475 Y OR2A1 n/a
12 TRCN0000187785 GCCTCATGAAATCAACCACTT pLKO.1 507 CDS 100% 4.050 2.025 Y OR2A1 n/a
13 TRCN0000188069 CCACTTCTTCTGTGAAATCCT pLKO.1 522 CDS 100% 3.000 1.500 Y OR2A42 n/a
14 TRCN0000009348 CCCATGTACTTCTTCCTCTCA pLKO.1 169 CDS 100% 2.640 1.320 Y OR2A4 n/a
15 TRCN0000203811 CTTCTGTGAAATCCTGTCTGT pLKO.1 528 CDS 100% 2.640 1.320 Y OR2A42 n/a
16 TRCN0000204000 GTTCTATATCTTCACCCTGCT pLKO.1 96 CDS 100% 2.160 1.080 Y OR2A42 n/a
17 TRCN0000188137 CCTGTTCTATATCTTCACCCT pLKO.1 93 CDS 100% 0.660 0.330 Y OR2A1 n/a
18 TRCN0000189182 CCCATGTACTTCTTCCTCTCT pLKO.1 169 CDS 100% 2.640 1.320 Y Olfr444 n/a
19 TRCN0000184864 CAACCACTTCTTCTGTGAATA pLKO.1 519 CDS 100% 13.200 6.600 Y Olfr1163 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001001802.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.