Transcript: Mouse NM_001001810.2

Mus musculus olfactory receptor 1206 (Olfr1206), mRNA.

Source:
NCBI, updated 2012-08-25
Taxon:
Mus musculus (mouse)
Gene:
Olfr1206 (258896)
Length:
924
CDS:
1..924

Additional Resources:

NCBI RefSeq record:
NM_001001810.2
NBCI Gene record:
Olfr1206 (258896)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001001810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000186758 GCCCAATTTGATTGACCATTA pLKO.1 504 CDS 100% 10.800 6.480 N Olfr1206 n/a
2 TRCN0000188830 GTCCTCATTCTCATGGCTGTT pLKO.1 334 CDS 100% 4.050 2.430 N Olfr1206 n/a
3 TRCN0000203813 CCATCTGTAAACCCTTACGAT pLKO.1 368 CDS 100% 3.000 1.800 N Olfr1206 n/a
4 TRCN0000030328 GCATGGATACATACATGATAA pLKO.1 560 CDS 100% 13.200 6.600 Y Olfr1201 n/a
5 TRCN0000030330 CCCATGTACTTCTTCCTGTTT pLKO.1 166 CDS 100% 4.950 2.475 Y Olfr1205 n/a
6 TRCN0000030329 GCAGGTCTGTGTCATCTTGAT pLKO.1 408 CDS 100% 4.950 2.475 Y Olfr1205 n/a
7 TRCN0000030327 CCATTTATTTGGCTGCATGGA pLKO.1 306 CDS 100% 2.640 1.320 Y Olfr1201 n/a
8 TRCN0000188152 CTACTAGGATTGACACAGGAT pLKO.1 34 CDS 100% 2.640 1.320 Y Olfr1206 n/a
9 TRCN0000030325 GCTGTGACTTACAGCCATTAT pLKO.1 527 CDS 100% 1.320 0.660 Y Olfr1201 n/a
10 TRCN0000030326 CCCTGCATATTCATATATGCA pLKO.1 751 CDS 100% 0.300 0.150 Y Olfr1201 n/a
11 TRCN0000360205 CTTGCCTGGATAGGGTCTTTA pLKO_005 433 CDS 100% 13.200 7.920 N OR4C11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001001810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.