Transcript: Human NM_001002923.2

Homo sapiens IGF like family member 4 (IGFL4), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
IGFL4 (444882)
Length:
1139
CDS:
55..429

Additional Resources:

NCBI RefSeq record:
NM_001002923.2
NBCI Gene record:
IGFL4 (444882)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001002923.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000166595 CGGTGTCATCCTAGACTTGAA pLKO.1 204 CDS 100% 4.950 6.930 N IGFL4 n/a
2 TRCN0000163220 GTCAAGATCTGACCTCATCTA pLKO.1 408 CDS 100% 4.950 3.960 N IGFL4 n/a
3 TRCN0000163596 CAGATCTTAGACTGTGGCTAT pLKO.1 122 CDS 100% 4.050 3.240 N IGFL4 n/a
4 TRCN0000166823 CCAGACAGTTGTGAGGTTCAA pLKO.1 306 CDS 100% 4.950 3.465 N IGFL4 n/a
5 TRCN0000372512 GGCATGAAGCCAGATTGCAAG pLKO_005 334 CDS 100% 4.050 2.835 N IGFL4 n/a
6 TRCN0000372451 TGCCCAGGAATACCACCCAAA pLKO_005 378 CDS 100% 4.050 2.835 N IGFL4 n/a
7 TRCN0000165883 GAACCAGACAGTTGTGAGGTT pLKO.1 303 CDS 100% 2.640 1.848 N IGFL4 n/a
8 TRCN0000165496 GACAGTTGTGAGGTTCAAGGT pLKO.1 309 CDS 100% 2.640 1.848 N IGFL4 n/a
9 TRCN0000163255 GTTCAAACTCAGAAGGAGTCA pLKO.1 101 CDS 100% 2.640 1.848 N IGFL4 n/a
10 TRCN0000378734 TGGAGTCTTTGGGCTCTCAGA pLKO_005 284 CDS 100% 2.640 1.848 N IGFL4 n/a
11 TRCN0000164342 CAGAAGGAGTCACAGATCTTA pLKO.1 110 CDS 100% 5.625 3.375 N IGFL4 n/a
12 TRCN0000149587 CCTCTTCAAGGAGAACTACAA pLKO.1 722 3UTR 100% 4.950 2.475 Y POT1-AS1 n/a
13 TRCN0000157513 GCCAAGTCAATCCTAAGCCAA pLKO.1 954 3UTR 100% 2.640 1.320 Y LOC340211 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001002923.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.