Transcript: Human NM_001007267.2

Homo sapiens phospholipase A2 receptor 1 (PLA2R1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
PLA2R1 (22925)
Length:
5175
CDS:
213..4187

Additional Resources:

NCBI RefSeq record:
NM_001007267.2
NBCI Gene record:
PLA2R1 (22925)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001007267.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373223 GGAATCCCTACAATCGTAATT pLKO_005 1357 CDS 100% 13.200 18.480 N PLA2R1 n/a
2 TRCN0000062569 GCCGTTATGAAAGAGATGAAA pLKO.1 835 CDS 100% 5.625 7.875 N PLA2R1 n/a
3 TRCN0000062572 GCCTAGTATCTGTAAGCGAAA pLKO.1 3011 CDS 100% 4.050 5.670 N PLA2R1 n/a
4 TRCN0000378881 AGTAGGTTGTGATACTATTTG pLKO_005 890 CDS 100% 13.200 10.560 N PLA2R1 n/a
5 TRCN0000373224 CCAAGCTTCCAGCGGTTATTA pLKO_005 1823 CDS 100% 15.000 10.500 N PLA2R1 n/a
6 TRCN0000062571 CCACAGATAATGGTCTTAATT pLKO.1 3745 CDS 100% 15.000 10.500 N PLA2R1 n/a
7 TRCN0000450177 AGCACAGCCTGCGAGTCATTT pLKO_005 3870 CDS 100% 13.200 9.240 N Pla2r1 n/a
8 TRCN0000062570 GCCCATATTGAGGAAGAGAAT pLKO.1 2340 CDS 100% 4.950 3.465 N PLA2R1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001007267.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.