Transcript: Mouse NM_001007573.3

Mus musculus mannosidase, endo-alpha-like (Maneal), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Maneal (215090)
Length:
2727
CDS:
5..1363

Additional Resources:

NCBI RefSeq record:
NM_001007573.3
NBCI Gene record:
Maneal (215090)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001007573.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000267055 ACCCATACTAAGCACCTATTG pLKO_005 1795 3UTR 100% 10.800 15.120 N Maneal n/a
2 TRCN0000267058 ATACTCGGAACCGGGTCAATG pLKO_005 1110 CDS 100% 10.800 15.120 N Maneal n/a
3 TRCN0000197572 CTACCGTTACAAGAATAGCAT pLKO.1 748 CDS 100% 3.000 4.200 N Maneal n/a
4 TRCN0000267056 ACGGAATGTACACCTACTTTG pLKO_005 948 CDS 100% 10.800 8.640 N Maneal n/a
5 TRCN0000267057 CTCACCAGTCCAGCCTGTATT pLKO_005 1281 CDS 100% 13.200 9.240 N Maneal n/a
6 TRCN0000283430 CTGGCATGGCTGATGATAATG pLKO_005 567 CDS 100% 13.200 9.240 N Maneal n/a
7 TRCN0000178108 GCTGGATTTAACCCTGCATAT pLKO.1 2549 3UTR 100% 10.800 7.560 N Maneal n/a
8 TRCN0000136279 GAACTGGAAAGCTGTGAAGAA pLKO.1 1003 CDS 100% 4.950 3.465 N MANEAL n/a
9 TRCN0000181543 GAGGGCACACAGATTGAGAAA pLKO.1 1214 CDS 100% 4.950 3.465 N Maneal n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001007573.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.