Transcript: Mouse NM_001025373.2

Mus musculus zinc finger prtoein 943 (Zfp943), mRNA.

Source:
NCBI, updated 2017-05-02
Taxon:
Mus musculus (mouse)
Gene:
Zfp943 (74670)
Length:
2736
CDS:
303..1826

Additional Resources:

NCBI RefSeq record:
NM_001025373.2
NBCI Gene record:
Zfp943 (74670)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001025373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095647 GAGCCATTACTTAACTCATAA pLKO.1 461 CDS 100% 13.200 18.480 N Zfp943 n/a
2 TRCN0000095644 CCACTGATTAAGATTGGTAAT pLKO.1 2416 3UTR 100% 10.800 8.640 N Zfp943 n/a
3 TRCN0000095646 CCCGCAAAGGAGACGTTATTA pLKO.1 955 CDS 100% 15.000 10.500 N Zfp943 n/a
4 TRCN0000095645 CCCGAAATGTAATCTTAACAT pLKO.1 1796 CDS 100% 5.625 3.938 N Zfp943 n/a
5 TRCN0000095648 CTAAACATGAACTCATGCTTA pLKO.1 793 CDS 100% 4.950 3.465 N Zfp943 n/a
6 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1580 CDS 100% 15.000 7.500 Y Zfp984 n/a
7 TRCN0000086300 CAGGAGAGAAACCTTACAAAT pLKO.1 910 CDS 100% 13.200 6.600 Y Znf41-ps n/a
8 TRCN0000235353 CAGGAGAGAAACCTTACAAAT pLKO_005 910 CDS 100% 13.200 6.600 Y EG666605 n/a
9 TRCN0000429043 ACCTTACAAATGTAATGAATG pLKO_005 1256 CDS 100% 10.800 5.400 Y Rex2 n/a
10 TRCN0000418910 ACCTTACAAATGTAGTGAATG pLKO_005 1004 CDS 100% 10.800 5.400 Y Rex2 n/a
11 TRCN0000239543 ACAGGAGAGAAACCTTATAAA pLKO_005 1581 CDS 100% 15.000 7.500 Y Gm13212 n/a
12 TRCN0000239545 CCTTACAAATGTAGTGAATTT pLKO_005 1005 CDS 100% 13.200 6.600 Y Gm13212 n/a
13 TRCN0000159149 GAGAGACCTTACAAATGTAAT pLKO.1 1924 3UTR 100% 13.200 6.600 Y ZNF470 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001025373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.