Transcript: Mouse NM_001033372.2

Mus musculus predicted gene 648 (Gm648), mRNA.

Source:
NCBI, updated 2017-04-29
Taxon:
Mus musculus (mouse)
Gene:
Gm648 (270599)
Length:
1040
CDS:
207..848

Additional Resources:

NCBI RefSeq record:
NM_001033372.2
NBCI Gene record:
Gm648 (270599)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001033372.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346015 CCGACGCTTTGGACGACAATA pLKO_005 653 CDS 100% 13.200 18.480 N Gm648 n/a
2 TRCN0000346001 GACCAAATTTGTCCAATTATG pLKO_005 604 CDS 100% 13.200 10.560 N Gm648 n/a
3 TRCN0000283472 TGGACATGGTGTCACATAAAT pLKO_005 277 CDS 100% 15.000 10.500 N Gm648 n/a
4 TRCN0000345987 AGAAGCTCAGCCCTATGTTTC pLKO_005 575 CDS 100% 10.800 7.560 N Gm648 n/a
5 TRCN0000346018 GAGTGTGATCCTGCTGTTACA pLKO_005 860 3UTR 100% 4.950 3.465 N Gm648 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033372.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.