Transcript: Mouse NM_001033536.1

Mus musculus regulatory factor X, 7 (Rfx7), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Rfx7 (319758)
Length:
8000
CDS:
581..4960

Additional Resources:

NCBI RefSeq record:
NM_001033536.1
NBCI Gene record:
Rfx7 (319758)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001033536.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234869 TCTAATATCCCACGGTCTAAT pLKO_005 4133 CDS 100% 13.200 18.480 N Rfx7 n/a
2 TRCN0000234868 ATCATCGTCTCCGGATGTAAA pLKO_005 2830 CDS 100% 13.200 10.560 N Rfx7 n/a
3 TRCN0000234870 CATAGTTATTCACAGGTTATT pLKO_005 7409 3UTR 100% 13.200 9.240 N Rfx7 n/a
4 TRCN0000234867 CCTTGTAAAGAGTCACTATAT pLKO_005 1321 CDS 100% 13.200 9.240 N Rfx7 n/a
5 TRCN0000234866 TCTTGGCTACCATCCATTAAG pLKO_005 997 CDS 100% 13.200 9.240 N Rfx7 n/a
6 TRCN0000135841 CCAACAACATAGCTCAAAGAA pLKO.1 4224 CDS 100% 5.625 3.938 N RFX7 n/a
7 TRCN0000137675 GCCCAGAAAGTGTTAAGCCAA pLKO.1 1268 CDS 100% 2.640 2.112 N RFX7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033536.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.