Transcript: Mouse NM_001037168.1

Mus musculus pregnancy-specific glycoprotein 27 (Psg27), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Psg27 (545925)
Length:
1989
CDS:
180..1604

Additional Resources:

NCBI RefSeq record:
NM_001037168.1
NBCI Gene record:
Psg27 (545925)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001037168.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000177553 CACTACATTTACTGGACTATA pLKO.1 412 CDS 100% 13.200 18.480 N Psg27 n/a
2 TRCN0000198401 GCTTGCAATTGCACTACATTT pLKO.1 401 CDS 100% 13.200 9.240 N Psg27 n/a
3 TRCN0000181575 GCAAACATGGAGAACTGGTAT pLKO.1 550 CDS 100% 4.950 3.465 N Psg27 n/a
4 TRCN0000178521 GCTTTCCAACTTGTTTAGCTT pLKO.1 1838 3UTR 100% 3.000 2.100 N Psg27 n/a
5 TRCN0000215920 CTACAAACTCTGAATCGATAT pLKO.1 900 CDS 100% 10.800 6.480 N Psg27 n/a
6 TRCN0000182744 CCTGGTACAAAGGCGTAGATA pLKO.1 1093 CDS 100% 5.625 3.375 N Psg27 n/a
7 TRCN0000182540 GCCAACTCAAAGACCAGTCTT pLKO.1 1554 CDS 100% 4.950 2.970 N Psg27 n/a
8 TRCN0000198585 CCAGGTCTATAATCTGCCAAA pLKO.1 1055 CDS 100% 4.050 2.025 Y Psg27 n/a
9 TRCN0000177386 GCTCTTCAACAATCAGAGTTT pLKO.1 1427 CDS 100% 4.950 2.475 Y Psg26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001037168.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.