Transcript: Mouse NM_001040700.2

Mus musculus cDNA sequence BC051019 (BC051019), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
BC051019 (57355)
Length:
2030
CDS:
387..1595

Additional Resources:

NCBI RefSeq record:
NM_001040700.2
NBCI Gene record:
BC051019 (57355)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001040700.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000192578 GCTACAATATGTTCTCCTCCT pLKO.1 1372 CDS 100% 2.160 3.024 N BC051019 n/a
2 TRCN0000191246 CCAGAGGATGTTATTCAGTTT pLKO.1 801 CDS 100% 4.950 3.465 N BC051019 n/a
3 TRCN0000192579 GAAAGACTACAAGCACCTCAT pLKO.1 1053 CDS 100% 4.050 2.835 N BC051019 n/a
4 TRCN0000134065 GTTCATTTCTGGAATGGCAAA pLKO.1 969 CDS 100% 4.050 2.835 N C11orf16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001040700.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.