Transcript: Mouse NM_001043355.2

Mus musculus microtubule-associated protein 6 (Map6), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Map6 (17760)
Length:
2335
CDS:
286..1206

Additional Resources:

NCBI RefSeq record:
NM_001043355.2
NBCI Gene record:
Map6 (17760)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001043355.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000189711 GTACCTTTGAAGGGTCAGGAT pLKO.1 2021 3UTR 100% 0.000 0.000 N Map6 n/a
2 TRCN0000202074 CTGTGGTTCTTGGGCCTATAA pLKO.1 1977 3UTR 100% 13.200 9.240 N Map6 n/a
3 TRCN0000340930 CTGTGGTTCTTGGGCCTATAA pLKO_005 1977 3UTR 100% 13.200 9.240 N Map6 n/a
4 TRCN0000340932 GCAGGCCCAGAGCTAGTTAAA pLKO_005 1775 3UTR 100% 13.200 9.240 N Map6 n/a
5 TRCN0000340931 TGTAGTCCCAGGGTCCTTAAA pLKO_005 1345 3UTR 100% 13.200 9.240 N Map6 n/a
6 TRCN0000340859 AGCAAGCACTAAGGATCAAAG pLKO_005 1585 3UTR 100% 10.800 7.560 N Map6 n/a
7 TRCN0000189642 CAGAAGAATACGGAGCCTCTA pLKO.1 1134 CDS 100% 4.050 2.835 N Map6 n/a
8 TRCN0000189497 CCTCTGAAGAATCAGAGTCCT pLKO.1 1556 3UTR 100% 0.264 0.185 N Map6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001043355.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.