Transcript: Mouse NM_001080944.3

Mus musculus ATPase, class I, type 8B, member 4 (Atp8b4), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Atp8b4 (241633)
Length:
5529
CDS:
108..3692

Additional Resources:

NCBI RefSeq record:
NM_001080944.3
NBCI Gene record:
Atp8b4 (241633)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001080944.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253345 ACTGGGCCAGATCGAATATAT pLKO_005 1256 CDS 100% 15.000 21.000 N Atp8b4 n/a
2 TRCN0000253342 ACGCCATGGATGCTCTATTTG pLKO_005 2191 CDS 100% 13.200 18.480 N Atp8b4 n/a
3 TRCN0000253344 GAAACCCAGAAGGACGTATAA pLKO_005 1759 CDS 100% 13.200 10.560 N Atp8b4 n/a
4 TRCN0000253343 GAATATGCCTTAGTCATAAAT pLKO_005 2370 CDS 100% 15.000 10.500 N Atp8b4 n/a
5 TRCN0000265382 TGCTAACATGGTTAGGTTTAT pLKO_005 4290 3UTR 100% 13.200 9.240 N Atp8b4 n/a
6 TRCN0000015008 CCAACCAACCAACCAACCAAA pLKO.1 5082 3UTR 100% 4.950 2.475 Y HMBOX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001080944.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.