Transcript: Human NM_001083885.2

Homo sapiens whirlin (WHRN), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
WHRN (25861)
Length:
2915
CDS:
641..2215

Additional Resources:

NCBI RefSeq record:
NM_001083885.2
NBCI Gene record:
WHRN (25861)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001083885.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083356 CCGTGACTACATTGACTTTCT pLKO.1 2167 CDS 100% 4.950 3.960 N WHRN n/a
2 TRCN0000083354 CGGAGCTTTCTCAACATCCTA pLKO.1 485 5UTR 100% 3.000 2.400 N WHRN n/a
3 TRCN0000190452 GTACGGCCTTGGCATTTACAT pLKO.1 388 5UTR 100% 5.625 3.938 N Whrn n/a
4 TRCN0000083355 CCTGCCTAGGATTGTCACTAT pLKO.1 2008 CDS 100% 4.950 3.465 N WHRN n/a
5 TRCN0000083357 GACCGTGACTACATTGACTTT pLKO.1 2165 CDS 100% 4.950 3.465 N WHRN n/a
6 TRCN0000083353 GCAAGACCTTTAGTGCCACAA pLKO.1 2640 3UTR 100% 4.050 2.835 N WHRN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001083885.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.